Last updated on 2025-11-21 00:49:12 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [83s/161s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.525, system: 0.036, elapsed: 2.843 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.307, system: 0.051, elapsed: 17.193 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.015, elapsed: 0.421 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.824, system: 0.208, elapsed: 7.590 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.003, elapsed: 0.306 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.575, system: 0.336, elapsed: 29.434 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.529, system: 0.030, elapsed: 2.904 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.351, system: 0.106, elapsed: 18.332 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.201, system: 0.016, elapsed: 0.616 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.976, system: 0.232, elapsed: 9.817 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.005, elapsed: 0.410 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.800, system: 0.418, elapsed: 33.214 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.540, system: 0.030, elapsed: 4.421 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.482, system: 0.137, elapsed: 27.299 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.020, elapsed: 0.537 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.043, system: 0.262, elapsed: 9.890 seconds]
Computing values for grid cells...
... done. [user: 0.192, system: 0.020, elapsed: 0.427 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.255, system: 0.297, elapsed: 1.764 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.376, system: 0.824, elapsed: 45.977 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.671, system: 0.061, elapsed: 2.922 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.482, system: 0.076, elapsed: 15.006 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.014, elapsed: 0.334 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.875, system: 0.190, elapsed: 5.862 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.003, elapsed: 0.251 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.925, system: 0.509, elapsed: 17.534 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.999, system: 0.881, elapsed: 43.002 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [83s/166s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.531, system: 0.038, elapsed: 3.452 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.357, system: 0.071, elapsed: 20.736 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.190, system: 0.016, elapsed: 0.516 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.693, system: 0.208, elapsed: 9.541 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.007, elapsed: 0.436 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.498, system: 0.371, elapsed: 36.017 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.542, system: 0.032, elapsed: 3.129 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.304, system: 0.060, elapsed: 19.033 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.014, elapsed: 0.375 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.916, system: 0.189, elapsed: 6.512 seconds]
Computing values for grid cells...
... done. [user: 0.160, system: 0.003, elapsed: 0.265 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.683, system: 0.336, elapsed: 30.471 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.673, system: 0.060, elapsed: 2.861 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.651, system: 0.123, elapsed: 16.135 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.013, elapsed: 0.440 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.812, system: 0.194, elapsed: 7.997 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.004, elapsed: 0.387 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.115, system: 0.289, elapsed: 1.541 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.293, system: 0.720, elapsed: 30.692 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.716, system: 0.053, elapsed: 3.636 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.530, system: 0.082, elapsed: 18.515 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.014, elapsed: 0.332 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.761, system: 0.196, elapsed: 6.768 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.003, elapsed: 0.292 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.986, system: 0.690, elapsed: 25.689 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.017, system: 1.071, elapsed: 56.525 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64