Last updated on 2025-09-19 00:51:24 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [81s/125s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.683, system: 0.089, elapsed: 2.685 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.194, system: 0.246, elapsed: 13.117 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.017, elapsed: 0.272 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.910, system: 0.279, elapsed: 6.675 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.005, elapsed: 0.312 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.679, system: 0.667, elapsed: 23.931 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.575, system: 0.064, elapsed: 2.588 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.283, system: 0.300, elapsed: 12.991 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.019, elapsed: 0.229 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.844, system: 0.266, elapsed: 4.919 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.011, elapsed: 0.280 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.585, system: 0.689, elapsed: 21.774 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.785, system: 0.101, elapsed: 2.698 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.109, system: 0.196, elapsed: 14.556 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.183, system: 0.011, elapsed: 0.354 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.664, system: 0.193, elapsed: 6.084 seconds]
Computing values for grid cells...
... done. [user: 0.159, system: 0.002, elapsed: 0.264 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.143, system: 0.214, elapsed: 1.513 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.669, system: 0.753, elapsed: 26.535 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.426, system: 0.032, elapsed: 3.919 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.051, system: 0.066, elapsed: 15.495 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.013, elapsed: 0.334 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.704, system: 0.173, elapsed: 6.011 seconds]
Computing values for grid cells...
... done. [user: 0.160, system: 0.004, elapsed: 0.230 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 10.177, system: 0.454, elapsed: 16.962 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.348, system: 0.773, elapsed: 44.392 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/124s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.528, system: 0.044, elapsed: 2.759 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.012, system: 0.100, elapsed: 15.583 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.193, system: 0.015, elapsed: 0.347 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.684, system: 0.199, elapsed: 6.738 seconds]
Computing values for grid cells...
... done. [user: 0.161, system: 0.003, elapsed: 0.239 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.125, system: 0.381, elapsed: 26.726 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.490, system: 0.038, elapsed: 2.309 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.070, system: 0.095, elapsed: 15.082 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.014, elapsed: 0.340 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.696, system: 0.183, elapsed: 5.856 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.007, elapsed: 0.237 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.148, system: 0.369, elapsed: 24.682 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.541, system: 0.034, elapsed: 2.516 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.041, system: 0.095, elapsed: 13.619 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.012, elapsed: 0.271 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.602, system: 0.169, elapsed: 5.022 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.017, elapsed: 0.251 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.055, system: 0.242, elapsed: 0.909 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.227, system: 0.606, elapsed: 23.541 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.531, system: 0.039, elapsed: 2.155 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.022, system: 0.124, elapsed: 13.574 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.017, elapsed: 0.306 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.623, system: 0.211, elapsed: 6.570 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.006, elapsed: 0.308 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 10.121, system: 0.552, elapsed: 17.175 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.312, system: 0.979, elapsed: 41.082 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64