Last updated on 2025-10-25 00:50:18 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [91s/234s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.853, system: 0.138, elapsed: 5.293 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.693, system: 0.339, elapsed: 31.018 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.027, elapsed: 0.727 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.161, system: 0.343, elapsed: 11.752 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.011, elapsed: 0.478 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.781, system: 1.160, elapsed: 51.740 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.661, system: 0.080, elapsed: 3.409 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.614, system: 0.339, elapsed: 23.565 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.035, elapsed: 0.583 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.257, system: 0.437, elapsed: 13.067 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.010, elapsed: 0.493 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.608, system: 1.309, elapsed: 43.594 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.704, system: 0.080, elapsed: 4.876 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.587, system: 0.320, elapsed: 22.715 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.204, system: 0.037, elapsed: 0.597 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.180, system: 0.431, elapsed: 9.780 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.011, elapsed: 0.633 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.244, system: 0.317, elapsed: 2.230 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.859, system: 1.541, elapsed: 43.803 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.594, system: 0.067, elapsed: 4.063 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.619, system: 0.332, elapsed: 22.526 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.204, system: 0.036, elapsed: 0.528 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.259, system: 0.435, elapsed: 11.945 seconds]
Computing values for grid cells...
... done. [user: 0.189, system: 0.013, elapsed: 0.509 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.311, system: 0.994, elapsed: 34.547 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 28.010, system: 2.246, elapsed: 77.005 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [90s/220s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.652, system: 0.079, elapsed: 4.944 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.423, system: 0.274, elapsed: 27.179 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.025, elapsed: 0.442 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.911, system: 0.344, elapsed: 10.450 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.014, elapsed: 0.560 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.039, system: 1.210, elapsed: 47.892 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.575, system: 0.067, elapsed: 4.125 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.262, system: 0.234, elapsed: 22.507 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.197, system: 0.035, elapsed: 0.569 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.101, system: 0.539, elapsed: 11.104 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.013, elapsed: 0.390 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.021, system: 1.231, elapsed: 41.304 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.707, system: 0.095, elapsed: 3.896 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.319, system: 0.239, elapsed: 19.669 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.194, system: 0.025, elapsed: 0.358 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.805, system: 0.377, elapsed: 8.869 seconds]
Computing values for grid cells...
... done. [user: 0.201, system: 0.040, elapsed: 0.650 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.157, system: 0.375, elapsed: 1.999 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.207, system: 1.641, elapsed: 38.292 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.709, system: 0.107, elapsed: 4.057 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.479, system: 0.339, elapsed: 25.159 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.035, elapsed: 0.697 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.067, system: 0.444, elapsed: 11.984 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.013, elapsed: 0.335 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.209, system: 1.395, elapsed: 32.880 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.638, system: 2.788, elapsed: 77.930 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64