CRAN Package Check Results for Maintainer Teng Gao <tgaoteng at gmail.com>

CRAN Package Check Results for Maintainer ‘Teng Gao <tgaoteng at gmail.com>’

Last updated on 2025-10-21 00:50:52 CEST.

Package	NOTE	OK
hahmmr	3	10
numbat	6	7
scistreer	5	8

Package hahmmr

Current CRAN status: NOTE: 3, OK: 10

Version: 1.0.0
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: calc_allele_lik_s3.html:62:1 (calc_allele_lik_s3.Rd:18): Warning: missing </ul> before </div> Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.0
Check: installed package size
Result: NOTE installed size is 5.8Mb sub-directories of 1Mb or more: data 3.0Mb libs 2.5Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package numbat

Current CRAN status: NOTE: 6, OK: 7

Version: 1.4.2
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: Numbat.html:397:1 (Numbat.Rd:230): Warning: missing </ul> before </div> Numbat.html:165:1 (Numbat.Rd:94): Warning: <h5> anchor "Usage" already defined Numbat.html:171:1 (Numbat.Rd:98): Warning: <h5> anchor "Arguments" already defined Numbat.html:194:1 (Numbat.Rd:111): Warning: <h5> anchor "Usage" already defined Numbat.html:200:1 (Numbat.Rd:115): Warning: <h5> anchor "Arguments" already defined Numbat.html:227:1 (Numbat.Rd:132): Warning: <h5> anchor "Usage" already defined Numbat.html:233:1 (Numbat.Rd:136): Warning: <h5> anchor "Arguments" already defined Numbat.html:256:1 (Numbat.Rd:149): Warning: <h5> anchor "Usage" already defined Numbat.html:262:1 (Numbat.Rd:153): Warning: <h5> anchor "Arguments" already defined Numbat.html:285:1 (Numbat.Rd:166): Warning: <h5> anchor "Usage" already defined Numbat.html:291:1 (Numbat.Rd:170): Warning: <h5> anchor "Arguments" already defined Numbat.html:314:1 (Numbat.Rd:183): Warning: <h5> anchor "Usage" already defined Numbat.html:320:1 (Numbat.Rd:187): Warning: <h5> anchor "Arguments" already defined Numbat.html:343:1 (Numbat.Rd:200): Warning: <h5> anchor "Usage" already defined Numbat.html:349:1 (Numbat.Rd:204): Warning: <h5> anchor "Arguments" already defined Numbat.html:374:1 (Numbat.Rd:219): Warning: <h5> anchor "Usage" already defined Numbat.html:380:1 (Numbat.Rd:223): Warning: <h5> anchor "Arguments" already defined approx_theta_post.html:78:1 (approx_theta_post.Rd:30): Warning: missing </ul> before </div> calc_allele_lik.html:62:1 (calc_allele_lik.Rd:18): Warning: missing </ul> before </div> check_contam.html:46:1 (check_contam.Rd:10): Warning: missing </ul> before </div> check_exp_noise.html:46:1 (check_exp_noise.Rd:10): Warning: missing </ul> before </div> exp_hclust.html:78:1 (exp_hclust.Rd:30): Warning: missing </ul> before </div> get_internal_nodes.html:54:1 (get_internal_nodes.Rd:14): Warning: missing </ul> before </div> get_lambdas_bar.html:54:1 (get_lambdas_bar.Rd:14): Warning: missing </ul> before </div> log_message.html:50:1 (log_message.Rd:12): Warning: missing </ul> before </div> relevel_chrom.html:46:1 (relevel_chrom.Rd:10): Warning: missing </ul> before </div> run_group_hmms.html:98:1 (run_group_hmms.Rd:44): Warning: missing </ul> before </div> upgma.html:56:1 (upgma.Rd:16): Warning: missing </ul> before </div> viterbi_loh.html:51:1 (viterbi_loh.Rd:15): Warning: missing </ul> before </div> Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.4.2
Check: dependencies in R code
Result: NOTE Namespaces in Imports field not imported from: ‘R.utils’ ‘optparse’ ‘vcfR’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.4.2
Check: installed package size
Result: NOTE installed size is 5.5Mb sub-directories of 1Mb or more: data 4.2Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.4.2
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package scistreer

Current CRAN status: NOTE: 5, OK: 8

Version: 1.2.0
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘Rcpp’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.2.0
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64