Last updated on 2025-09-16 12:52:41 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [81s/146s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.463, system: 0.037, elapsed: 2.378 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.184, system: 0.130, elapsed: 15.760 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.015, elapsed: 0.342 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.926, system: 0.221, elapsed: 7.196 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.005, elapsed: 0.298 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.488, system: 0.433, elapsed: 26.961 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.498, system: 0.039, elapsed: 2.594 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.180, system: 0.093, elapsed: 14.556 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.193, system: 0.014, elapsed: 0.306 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.863, system: 0.179, elapsed: 6.528 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.004, elapsed: 0.244 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.466, system: 0.350, elapsed: 25.097 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.553, system: 0.038, elapsed: 2.691 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.066, system: 0.061, elapsed: 23.385 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.190, system: 0.012, elapsed: 0.536 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.833, system: 0.191, elapsed: 9.482 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.004, elapsed: 0.362 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.188, system: 0.242, elapsed: 1.486 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.660, system: 0.573, elapsed: 39.317 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.485, system: 0.037, elapsed: 2.939 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.141, system: 0.065, elapsed: 16.367 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.014, elapsed: 0.380 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.790, system: 0.191, elapsed: 7.678 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.003, elapsed: 0.354 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.404, system: 0.478, elapsed: 17.846 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.867, system: 0.824, elapsed: 47.085 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [80s/128s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.539, system: 0.042, elapsed: 2.434 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.030, system: 0.112, elapsed: 16.451 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.016, elapsed: 0.500 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.710, system: 0.214, elapsed: 6.181 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.004, elapsed: 0.242 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.166, system: 0.410, elapsed: 26.867 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.535, system: 0.042, elapsed: 2.663 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.130, system: 0.095, elapsed: 14.632 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.015, elapsed: 0.288 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.748, system: 0.177, elapsed: 6.861 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.003, elapsed: 0.270 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.360, system: 0.355, elapsed: 25.694 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.571, system: 0.038, elapsed: 2.477 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.151, system: 0.072, elapsed: 13.630 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.190, system: 0.012, elapsed: 0.304 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.664, system: 0.173, elapsed: 5.997 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.009, elapsed: 0.243 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.029, system: 0.245, elapsed: 0.924 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.456, system: 0.583, elapsed: 24.633 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.532, system: 0.055, elapsed: 2.125 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.224, system: 0.164, elapsed: 16.309 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.190, system: 0.016, elapsed: 0.323 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.679, system: 0.223, elapsed: 6.276 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.008, elapsed: 0.313 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.266, system: 0.472, elapsed: 16.245 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.730, system: 0.973, elapsed: 42.753 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64