Last updated on 2025-07-07 12:49:51 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/117s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.543, system: 0.056, elapsed: 2.203 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.748, system: 0.105, elapsed: 10.176 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.017, elapsed: 0.287 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.613, system: 0.180, elapsed: 4.758 seconds]
Computing values for grid cells...
... done. [user: 0.153, system: 0.003, elapsed: 0.166 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.777, system: 0.384, elapsed: 18.277 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.335, system: 0.026, elapsed: 1.471 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.830, system: 0.085, elapsed: 11.064 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.011, elapsed: 0.391 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.828, system: 0.180, elapsed: 6.954 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.003, elapsed: 0.288 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.865, system: 0.324, elapsed: 20.968 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.537, system: 0.031, elapsed: 2.929 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.014, system: 0.073, elapsed: 15.950 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.011, elapsed: 0.308 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.768, system: 0.196, elapsed: 6.513 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.003, elapsed: 0.269 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.153, system: 0.229, elapsed: 1.302 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.457, system: 0.569, elapsed: 28.418 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.456, system: 0.029, elapsed: 2.497 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.055, system: 0.072, elapsed: 14.558 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.012, elapsed: 0.295 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.646, system: 0.179, elapsed: 5.183 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.004, elapsed: 0.175 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.314, system: 0.475, elapsed: 17.271 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.487, system: 0.808, elapsed: 40.999 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/103s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.554, system: 0.047, elapsed: 1.897 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.936, system: 0.094, elapsed: 11.688 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.015, elapsed: 0.302 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.498, system: 0.194, elapsed: 4.254 seconds]
Computing values for grid cells...
... done. [user: 0.158, system: 0.004, elapsed: 0.180 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.867, system: 0.376, elapsed: 19.055 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.505, system: 0.034, elapsed: 1.838 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.029, system: 0.083, elapsed: 13.032 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.013, elapsed: 0.296 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.509, system: 0.166, elapsed: 5.486 seconds]
Computing values for grid cells...
... done. [user: 0.154, system: 0.003, elapsed: 0.281 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.927, system: 0.321, elapsed: 21.755 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.540, system: 0.033, elapsed: 2.420 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.981, system: 0.063, elapsed: 12.712 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.012, elapsed: 0.251 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.466, system: 0.156, elapsed: 4.840 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.002, elapsed: 0.250 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.046, system: 0.245, elapsed: 0.928 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.028, system: 0.537, elapsed: 22.410 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.459, system: 0.026, elapsed: 2.083 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.931, system: 0.087, elapsed: 13.160 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.183, system: 0.011, elapsed: 0.278 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.531, system: 0.198, elapsed: 5.421 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.005, elapsed: 0.284 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 9.933, system: 0.520, elapsed: 12.255 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 24.831, system: 0.880, elapsed: 34.520 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64