PepMapViz: A Versatile Toolkit for Peptide Mapping, Visualization, and
Comparative Exploration
A versatile R visualization package that empowers
researchers with comprehensive visualization tools for seamlessly mapping peptides
to protein sequences, identifying distinct domains and regions of interest,
accentuating mutations, and highlighting post-translational modifications,
all while enabling comparisons across diverse experimental conditions.
Potential applications of 'PepMapViz' include the visualization of cross-software
mass spectrometry results at the peptide level for specific protein and domain
details in a linearized format and post-translational modification coverage
across different experimental conditions; unraveling insights into disease
mechanisms. It also enables visualization of Major histocompatibility
complex-presented peptide clusters in different antibody regions predicting
immunogenicity in antibody drug development.
| Version: |
1.1.0 |
| Imports: |
shiny, ggplot2, stringr, ggforce, ggh4x, ggnewscale, data.table, rlang, DT |
| Suggests: |
knitr, rmarkdown, testthat (≥ 3.0.0), mzID, MSnbase |
| Published: |
2025-06-25 |
| DOI: |
10.32614/CRAN.package.PepMapViz |
| Author: |
Zhenru Zhou [aut, cre],
Qui Phung [aut],
Corey Bakalarski [aut] |
| Maintainer: |
Zhenru Zhou <zhou.zhenru at gene.com> |
| License: |
MIT + file LICENSE |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
PepMapViz results |
Documentation:
Downloads:
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