A collection of functions to facilitate analysis of proteomic
data from Olink, primarily NPX data that has been exported from Olink
Software. The functions also work on QUANT data from
Olink by log- transforming the QUANT data. The functions are focused
on reading data, facilitating data wrangling and quality control
analysis, performing statistical analysis and generating figures to
visualize the results of the statistical analysis. The goal of this
package is to help users extract biological insights from proteomic
data run on the Olink platform.
| Version: |
4.0.1 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
broom, car, cli (≥ 3.6.2), dplyr (≥ 1.1.1), data.table, emmeans, forcats, generics, ggplot2, ggpubr, ggrepel, grDevices, grid, magrittr, methods, readxl, rlang, rstatix, stats, stringr, tibble, tidyr, tidyselect, tools, utils |
| Suggests: |
arrow, clusterProfiler, extrafont, FSA, ggplotify, here, kableExtra, knitr, lme4, lmerTest, markdown, msigdbr, openssl, ordinal, pheatmap, rmarkdown, scales, systemfonts, testthat (≥
3.0.0), umap, vdiffr, zip |
| Published: |
2024-09-24 |
| DOI: |
10.32614/CRAN.package.OlinkAnalyze |
| Author: |
Kathleen Nevola 
[aut, cre] (kathy-nevola),
Marianne Sandin
[aut] (marisand),
Jamey Guess [aut]
(jrguess),
Simon Forsberg
[aut] (simfor),
Christoffer Cambronero [aut] (Orbmac),
Pascal Pucholt
[aut] (AskPascal),
Boxi Zhang [aut]
(boxizhang),
Masoumeh Sheikhi [aut] (MasoumehSheikhi),
Klev Diamanti
[aut] (klevdiamanti),
Amrita Kar [aut] (amrita-kar),
Lei Conze [aut] (leiliuC),
Kristyn Chin [aut] (kristynchin-olink),
Danai Topouza
[aut] (dtopouza),
Kristian Hodén
[ctb] (kristianHoden),
Per Eriksson
[ctb] (b_watcher),
Nicola Moloney
[ctb],
Britta Lötstedt
[ctb],
Emmett Sprecher
[ctb],
Jessica Barbagallo [ctb] (jbarbagallo),
Olof Mansson [ctr] (olofmansson),
Ola Caster [ctb] (OlaCaster),
Olink [cph, fnd] |
| Maintainer: |
Kathleen Nevola <biostattools at olink.com> |
| Contact: |
biostattools@olink.com |
| License: |
AGPL (≥ 3) |
| URL: |
https://olink.com/
https://github.com/Olink-Proteomics/OlinkRPackage |
| NeedsCompilation: |
no |
| Materials: |
NEWS |
| CRAN checks: |
OlinkAnalyze results |