Last updated on 2025-10-25 00:50:13 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| EBASE | 1 | 9 | 3 |
| MassWateR | 13 | ||
| micromap | 13 | ||
| SWMPr | 13 | ||
| wqtrends | 13 | ||
| WRTDStidal | 3 | 10 |
Current CRAN status: ERROR: 1, NOTE: 9, OK: 3
Version: 1.1.0
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘ebase_plot.R’ ‘ebase_prep.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 1.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘EBASE.Rmd’ using rmarkdown
Quitting from EBASE.Rmd:203-210 [unnamed-chunk-19]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `{
dat.sub <- dat[dat$grp == i, ]
num.measurements <- nrow(dat.sub)
DO_obs <- dat.sub$DO_obs
PAR <- dat.sub$PAR
DO_sat <- dat.sub$DO_sat
sc <- dat.sub$sc
Z <- dat.sub$Z
U10 <- dat.sub$WSpd
DO_start <- DO_obs[1]
if (doave) DO_start <- mean(DO_obs)
dat.list <- list("num.measurements", "nstepd", "interval", "aprior", "rprior",
"bprior", "bmax", "DO_obs", "PAR", "DO_sat", "Z", "sc", "U10", "DO_start")
params <- c("ats", "bts", "gppts", "erts", "gets", "nemts", "DO_mod")
metabfit <- do.call(jags.parallel, list(data = dat.list, parameters.to.save = params,
model.file = mod_in, n.chains = n.chains, n.iter = n.iter, n.burnin = n.burnin,
n.thin = n.thin, n.cluster = n.chains, DIC = TRUE, jags.seed = 123, digits = 5))
metabfit <- metab_update(metabfit, update.chains, n.iter)
srf <- metabfit$BUGSoutput$summary[, 8]
Rhat.test <- ifelse(any(srf > 1.1, na.rm = TRUE) == TRUE, "Check convergence",
"Fine")
cred <- data.frame(metabfit$BUGSoutput$summary)
cred$var <- row.names(cred)
cred$var <- gsub("\\[|\\]|\\d+", "", cred$var)
result <- data.frame(Date = dat.sub$Date, grp = dat.sub$grp, Z = Z, DO_obs = dat.sub$
DO_obs, DO_mod = metabfit$BUGSoutput$mean$DO_mod, DO_modlo = cred[cred$
var == "DO_mod", "X2.5."], DO_modhi = cred[cred$var == "DO_mod", "X97.5."],
DateTimeStamp = dat.sub$DateTimeStamp, ats = c(NA, metabfit$BUGSoutput$mean$
ats), atslo = c(NA, cred[cred$var == "ats", "X2.5."]), atshi = c(NA, cred[
cred$var == "ats", "X97.5."]), bts = c(NA, metabfit$BUGSoutput$mean$bts),
btslo = c(NA, cred[cred$var == "bts", "X2.5."]), btshi = c(NA, cred[cred$
var == "bts", "X97.5."]), gppts = c(NA, metabfit$BUGSoutput$mean$gppts),
gpptslo = c(NA, cred[cred$var == "gppts", "X2.5."]), gpptshi = c(NA, cred[
cred$var == "gppts", "X97.5."]), erts = c(NA, metabfit$BUGSoutput$mean$erts),
ertslo = c(NA, cred[cred$var == "erts", "X2.5."]), ertshi = c(NA, cred[cred$
var == "erts", "X97.5."]), nemts = c(NA, metabfit$BUGSoutput$mean$nemts),
nemtslo = c(NA, cred[cred$var == "nemts", "X2.5."]), nemtshi = c(NA, cred[
cred$var == "nemts", "X97.5."]), gets = c(NA, metabfit$BUGSoutput$mean$gets),
getslo = c(NA, cred[cred$var == "gets", "X2.5."]), getshi = c(NA, cred[cred$
var == "gets", "X97.5."]), dDO = c(NA, diff(metabfit$BUGSoutput$mean$DO_mod)),
converge = Rhat.test)
rsq <- lm(DO_mod ~ DO_obs, data = result) %>% summary() %>% .$r.squared
result$rsq <- rsq
return(result)
}`:
! task 2 failed - "creation of server socket failed: port 11991 cannot be opened"
---
Backtrace:
▆
1. └─EBASE::ebase(...)
2. └─... %dopar% ...
3. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'EBASE.Rmd' failed with diagnostics:
task 2 failed - "creation of server socket failed: port 11991 cannot be opened"
--- failed re-building ‘EBASE.Rmd’
SUMMARY: processing the following file failed:
‘EBASE.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 1.1.4
Check: installed package size
Result: NOTE
installed size is 5.4Mb
sub-directories of 1Mb or more:
doc 4.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64