Copula Mixed Models for Multivariate Meta-Analysis of Diagnostic Test Accuracy Studies

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Documentation for package ‘CopulaREMADA’ version 1.7.5

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A B C D F H I L M O P Q R S T V

CopulaREMADA-package Copula Mixed Models for Multivariate Meta-Analysis of Diagnostic Test Accuracy Studies

-- A --

arthritis The rheumatoid arthritis data

-- B --

betaDG The beta-D-Glucan-data

-- C --

CopulaREMADA Maximum likelhood estimation for copula mixed models for diagnostic test accurracy studies
CopulaREMADA.beta Maximum likelhood estimation for copula mixed models for diagnostic test accurracy studies
CopulaREMADA.norm Maximum likelhood estimation for copula mixed models for diagnostic test accurracy studies
coronary The coronary CT angiography data
countermonotonicCopulaREMADA Maximum likelhood estimation for copula mixed models for diagnostic test accurracy studies
countermonotonicCopulaREMADA.beta Maximum likelhood estimation for copula mixed models for diagnostic test accurracy studies
countermonotonicCopulaREMADA.norm Maximum likelhood estimation for copula mixed models for diagnostic test accurracy studies
countermonotonicity.vuong Vuong's test for the comparison of non-nested copula mixed models for diagnostic test accuaracy studies
CT The computing tomography data
cvinesim Simulation from a trivariate C-vine copula

-- D --

dbvn Bivariate copula densities
dcln Bivariate copula densities
dcln180 Bivariate copula densities
dcln270 Bivariate copula densities
dcln90 Bivariate copula densities
dcop Bivariate copula densities
dfrk Bivariate copula densities
Down The down syndrome data
dtrvinesim Simulation from a (truncated) quadrivariate D-vine copula
dvine6dsim Simulation from a six-variate 1-truncated D-vine copula
dvinesim Simulation from a (truncated) quadrivariate D-vine copula

-- F --

FactorCopulaREMADA Maximum likelihood estimation of 1-factor copula mixed models for joint meta-analysis of T diagnostic tests
FactorCopulaREMADA.beta Maximum likelihood estimation of 1-factor copula mixed models for joint meta-analysis of T diagnostic tests
FactorCopulaREMADA.norm Maximum likelihood estimation of 1-factor copula mixed models for joint meta-analysis of T diagnostic tests

-- H --

hybridCopulaREMADA Maximum likelhood estimation for hybrid copula mixed models for combining case-control and cohort studies in meta-analysis of diagnostic tests
hybridCopulaREMADA.beta Maximum likelhood estimation for hybrid copula mixed models for combining case-control and cohort studies in meta-analysis of diagnostic tests
hybridCopulaREMADA.norm Maximum likelhood estimation for hybrid copula mixed models for combining case-control and cohort studies in meta-analysis of diagnostic tests

-- I --

imperfect.fivevariateVineCopulaREMADA.beta.comprehensive Maximum likelihood estimation of 5-variate 1-truncated D-vine copula mixed models for meta-analysis of diagnostic accuracy studies without a gold standard
imperfect.fivevariateVineCopulaREMADA.norm.comprehensive Maximum likelihood estimation of 5-variate 1-truncated D-vine copula mixed models for meta-analysis of diagnostic accuracy studies without a gold standard
imperfect.quadrivariateVineCopulaREMADA.beta.comprehensive Maximum likelihood estimation of quadrivariate 1-truncated D-vine copula mixed models for meta-analysis of diagnostic accuracy studies without a gold standard
imperfect.quadrivariateVineCopulaREMADA.norm.comprehensive Maximum likelihood estimation of quadrivariate 1-truncated D-vine copula mixed models for meta-analysis of diagnostic accuracy studies without a gold standard
imperfect.trivariateVineCopulaREMADA Maximum likelihood estimation of trivariate 1-truncated D-vine copula mixed models for meta-analysis of diagnostic accuracy studies without a gold standard
imperfect.trivariateVineCopulaREMADA.beta Maximum likelihood estimation of trivariate 1-truncated D-vine copula mixed models for meta-analysis of diagnostic accuracy studies without a gold standard
imperfect.trivariateVineCopulaREMADA.beta.comprehensive Maximum likelihood estimation of trivariate 1-truncated D-vine copula mixed models for meta-analysis of diagnostic accuracy studies without a gold standard
imperfect.trivariateVineCopulaREMADA.norm Maximum likelihood estimation of trivariate 1-truncated D-vine copula mixed models for meta-analysis of diagnostic accuracy studies without a gold standard
imperfect.trivariateVineCopulaREMADA.norm.comprehensive Maximum likelihood estimation of trivariate 1-truncated D-vine copula mixed models for meta-analysis of diagnostic accuracy studies without a gold standard
imperfectCopulaREMADA Maximum likelihood estimation of bivariate copula mixed models for meta-analysis of diagnostic accuracy studies without a gold standard
imperfectCopulaREMADA.beta Maximum likelihood estimation of bivariate copula mixed models for meta-analysis of diagnostic accuracy studies without a gold standard
imperfectCopulaREMADA.norm Maximum likelihood estimation of bivariate copula mixed models for meta-analysis of diagnostic accuracy studies without a gold standard
imperfectREMADA Maximum likelihood estimation of univariate mixed models for meta-analysis of diagnostic accuracy studies without a gold standard
imperfectREMADA.beta Maximum likelihood estimation of univariate mixed models for meta-analysis of diagnostic accuracy studies without a gold standard
imperfectREMADA.norm Maximum likelihood estimation of univariate mixed models for meta-analysis of diagnostic accuracy studies without a gold standard

-- L --

LAG The lymphangiography data

-- M --

mgrid A list containing four-dimensional arrays
mgrid15 A list containing four-dimensional arrays
mgrid30 A list containing four-dimensional arrays
mgrid50 A list containing four-dimensional arrays
mgrid5d A list containing five-dimensional arrays
mgrid5d15 A list containing five-dimensional arrays
mgrid5d30 A list containing five-dimensional arrays
mgrid6d A list containing six-dimensional arrays
MK2016 The coronary CT angiography data in Menke and Kowalski (2016).
MRI The magnetic resonance imaging data
multinom6dVineCopulaREMADA Maximum likelhood estimation for multinomial six-variate 1-truncated D-vine copula mixed models for meta-analysis of two diagnostic tests accounting for within and between studies dependence
multinom6dVineCopulaREMADA.beta Maximum likelhood estimation for multinomial six-variate 1-truncated D-vine copula mixed models for meta-analysis of two diagnostic tests accounting for within and between studies dependence
multinom6dVineCopulaREMADA.norm Maximum likelhood estimation for multinomial six-variate 1-truncated D-vine copula mixed models for meta-analysis of two diagnostic tests accounting for within and between studies dependence
multinomVineCopulaREMADA Maximum likelhood estimation for multinomial quadrivariate (truncated) D-vine copula mixed models for diagnostic test accurracy studies accounting for non-evaluable outcomes
multinomVineCopulaREMADA.beta Maximum likelhood estimation for multinomial quadrivariate (truncated) D-vine copula mixed models for diagnostic test accurracy studies accounting for non-evaluable outcomes
multinomVineCopulaREMADA.norm Maximum likelhood estimation for multinomial quadrivariate (truncated) D-vine copula mixed models for diagnostic test accurracy studies accounting for non-evaluable outcomes

-- O --

OGT The orale glucose tolerance data

-- P --

Pap The Pap test data
pcondbvn Bivariate copula conditional distribution functions
pcondcln Bivariate copula conditional distribution functions
pcondcln180 Bivariate copula conditional distribution functions
pcondcln270 Bivariate copula conditional distribution functions
pcondcln90 Bivariate copula conditional distribution functions
pcondcop Bivariate copula conditional distribution functions
pcondfrk Bivariate copula conditional distribution functions

-- Q --

qcondbvn Bivariate copula conditional quantile functions
qcondcln Bivariate copula conditional quantile functions
qcondcln180 Bivariate copula conditional quantile functions
qcondcln270 Bivariate copula conditional quantile functions
qcondcln90 Bivariate copula conditional quantile functions
qcondcop Bivariate copula conditional quantile functions
qcondfrk Bivariate copula conditional quantile functions
quadVineCopulaREMADA Maximum likelihood estimation of quadrivariate D-vine copula mixed models for joint meta-analysis and comparison of two diagnostic tests
quadVineCopulaREMADA.beta Maximum likelihood estimation of quadrivariate D-vine copula mixed models for joint meta-analysis and comparison of two diagnostic tests
quadVineCopulaREMADA.norm Maximum likelihood estimation of quadrivariate D-vine copula mixed models for joint meta-analysis and comparison of two diagnostic tests
quadVineCopulaREMADA.norm.beta Maximum likelihood estimation of quadrivariate D-vine copula mixed models for joint meta-analysis and comparison of two diagnostic tests

-- R --

rbvn Simulation from parametric bivariate copula families
rcln Simulation from parametric bivariate copula families
rcln180 Simulation from parametric bivariate copula families
rcln270 Simulation from parametric bivariate copula families
rcln90 Simulation from parametric bivariate copula families
rcop Simulation from parametric bivariate copula families
rCopulaREMADA Simulation from copula mixed models for diagnostic test accuaracy studies
rCopulaREMADA.beta Simulation from copula mixed models for diagnostic test accuaracy studies
rCopulaREMADA.norm Simulation from copula mixed models for diagnostic test accuaracy studies
rFactorCopulaREMADA Simulation from 1-factor copula mixed models for joint meta-analysis of T diagnostic tests
rFactorCopulaREMADA.beta Simulation from 1-factor copula mixed models for joint meta-analysis of T diagnostic tests
rFactorCopulaREMADA.norm Simulation from 1-factor copula mixed models for joint meta-analysis of T diagnostic tests
rfrk Simulation from parametric bivariate copula families
rimperfect.trivariateVineCopulaREMADA Simulation from trivariate 1-truncated D-vine copula mixed models for meta-analysis of diagnostic accuracy studies without a gold standard
rimperfect.trivariateVineCopulaREMADA.beta Simulation from trivariate 1-truncated D-vine copula mixed models for meta-analysis of diagnostic accuracy studies without a gold standard
rimperfect.trivariateVineCopulaREMADA.norm Simulation from trivariate 1-truncated D-vine copula mixed models for meta-analysis of diagnostic accuracy studies without a gold standard
rmultinom6dVineCopulaREMADA Simulation from multinomial six-variate 1-truncated D-vine copula mixed models for meta-analysis of two diagnostic tests accounting for within and between studies dependence
rmultinom6dVineCopulaREMADA.beta Simulation from multinomial six-variate 1-truncated D-vine copula mixed models for meta-analysis of two diagnostic tests accounting for within and between studies dependence
rmultinom6dVineCopulaREMADA.norm Simulation from multinomial six-variate 1-truncated D-vine copula mixed models for meta-analysis of two diagnostic tests accounting for within and between studies dependence
rmultinomVineCopulaREMADA Simulation from multinomial quadrivariate (truncated) D-vine copula mixed models for diagnostic test accurracy studies accounting for non-evaluable outcomes
rmultinomVineCopulaREMADA.beta Simulation from multinomial quadrivariate (truncated) D-vine copula mixed models for diagnostic test accurracy studies accounting for non-evaluable outcomes
rmultinomVineCopulaREMADA.norm Simulation from multinomial quadrivariate (truncated) D-vine copula mixed models for diagnostic test accurracy studies accounting for non-evaluable outcomes
rVineCopulaREMADA Simulation from trivariate vine copula mixed models for diagnostic test accuaracy studies accounting for disease prevalence and non-evaluable results
rVineCopulaREMADA.beta Simulation from trivariate vine copula mixed models for diagnostic test accuaracy studies accounting for disease prevalence and non-evaluable results
rVineCopulaREMADA.norm Simulation from trivariate vine copula mixed models for diagnostic test accuaracy studies accounting for disease prevalence and non-evaluable results

-- S --

SROC Summary receiver operating characteristic curves for copula mixed effect models for bivariate meta-analysis of diagnostic test accuracy studies
SROC.beta Summary receiver operating characteristic curves for copula mixed effect models for bivariate meta-analysis of diagnostic test accuracy studies
SROC.norm Summary receiver operating characteristic curves for copula mixed effect models for bivariate meta-analysis of diagnostic test accuracy studies

-- T --

tau2par Mapping of Kendall's tau and copula parameter
tau2par.bvn Mapping of Kendall's tau and copula parameter
tau2par.cln Mapping of Kendall's tau and copula parameter
tau2par.cln180 Mapping of Kendall's tau and copula parameter
tau2par.cln270 Mapping of Kendall's tau and copula parameter
tau2par.cln90 Mapping of Kendall's tau and copula parameter
tau2par.frk Mapping of Kendall's tau and copula parameter
telomerase The telomerase data
tmultinomVineCopulaREMADA Maximum likelhood estimation for multinomial quadrivariate (truncated) D-vine copula mixed models for diagnostic test accurracy studies accounting for non-evaluable outcomes
tmultinomVineCopulaREMADA.beta Maximum likelhood estimation for multinomial quadrivariate (truncated) D-vine copula mixed models for diagnostic test accurracy studies accounting for non-evaluable outcomes
tmultinomVineCopulaREMADA.norm Maximum likelhood estimation for multinomial quadrivariate (truncated) D-vine copula mixed models for diagnostic test accurracy studies accounting for non-evaluable outcomes
tvine.vuong.beta Vuong's test for the comparison of non-nested vine copula mixed models for diagnostic test accuaracy studies
tvine.vuong.norm Vuong's test for the comparison of non-nested vine copula mixed models for diagnostic test accuaracy studies
tvine2.vuong.beta Vuong's test for the comparison of non-nested vine copula mixed models for diagnostic test accuaracy studies
tvine2.vuong.norm Vuong's test for the comparison of non-nested vine copula mixed models for diagnostic test accuaracy studies
tVineCopulaREMADA Maximum likelhood estimation for (truncated) vine copula mixed models for diagnostic test accurracy studies accounting for disease prevalence and non-evaluable outcomes
tVineCopulaREMADA.beta Maximum likelhood estimation for (truncated) vine copula mixed models for diagnostic test accurracy studies accounting for disease prevalence and non-evaluable outcomes
tVineCopulaREMADA.norm Maximum likelhood estimation for (truncated) vine copula mixed models for diagnostic test accurracy studies accounting for disease prevalence and non-evaluable outcomes

-- V --

vine.vuong Vuong's test for the comparison of non-nested vine copula mixed models for diagnostic test accuaracy studies
vine.vuong.beta Vuong's test for the comparison of non-nested vine copula mixed models for diagnostic test accuaracy studies
vine.vuong.norm Vuong's test for the comparison of non-nested vine copula mixed models for diagnostic test accuaracy studies
VineCopulaREMADA Maximum likelhood estimation for (truncated) vine copula mixed models for diagnostic test accurracy studies accounting for disease prevalence and non-evaluable outcomes
VineCopulaREMADA.beta Maximum likelhood estimation for (truncated) vine copula mixed models for diagnostic test accurracy studies accounting for disease prevalence and non-evaluable outcomes
VineCopulaREMADA.norm Maximum likelhood estimation for (truncated) vine copula mixed models for diagnostic test accurracy studies accounting for disease prevalence and non-evaluable outcomes
vuong Vuong's test for the comparison of non-nested copula mixed models for diagnostic test accuaracy studies
vuong.beta Vuong's test for the comparison of non-nested copula mixed models for diagnostic test accuaracy studies
vuong.norm Vuong's test for the comparison of non-nested copula mixed models for diagnostic test accuaracy studies