Parse and Manipulate Research Patient Data Registry ('RPDR') Text Queries

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Documentation for package ‘parseRPDR’ version 1.1.2

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all_ids_mi2b2 Legacy function to create a vector of all possible IDs for mi2b2 workbench
convert_dia Searches diagnosis columns for given diseases.
convert_enc Searches columns for given diseases defined by ICD codes.
convert_lab Converts lab results to normal/abnormal based-on reference values.
convert_med Adds boolean columns corresponding to a group of medications whether it is present in the given row.
convert_notes Extracts information from notes free text.
convert_phy Searches health history data for given codes
convert_prc Searches procedures columns for given procedures.
convert_rfv Searches columns for given reason for visit defined by ERFV codes.
create_img_db Create a database of DICOM headers.
export_notes Exports free text notes to individual text files.
find_exam Find exam data within a given timeframe using parallel CPU computing.
load_all Loads allergy data information into R.
load_all_data Loads all RPDR text outputs into R.
load_bib Loads BiobankFile data into R.
load_con Loads contact information into R.
load_dem Loads demographic information into R for new demographic tables following changes in the beginning of 2022.
load_dem_old Loads demographic information into R for demographics tables before 2022.
load_dia Loads diagnoses into R.
load_enc Loads encounter information into R.
load_lab Loads laboratory results into R.
load_lno Loads LMR note documents into R.
load_mcm Loads match control data into R.
load_med Loads medication order detail into R.
load_mic Loads microbiology results into R.
load_mrn Loads MRN data into R.
load_notes Loads note documents into R.
load_phy Loads helath history information into R.
load_prc Loads procedures into R.
load_prv Loads providers information into R.
load_ptd Loads patient data information into R.
load_rdt Loads radiology procedures data into R.
load_rfv Loads reason for visit data into R.
load_trn Loads transfusion results into R.
pretty_mrn Converts MRN integer to string compatible with RPDR.
pretty_numbers Converts numerical codes to universal format specified by length.
pretty_text Removes spaces, special characters and capitals from string vector.
remove_column Delete columns with all NA or all identical data.