| BBB_NMP_ad_subset | Example for "ad" format specification |
| BBB_NMP_GP_subset | Example for "gp" format specification |
| BBB_NMP_pl_subset | Example for "pl" format specification |
| BBB_PE_gt_subset | Example for "gt" format specification |
| BBB_samples | A file with names or IDs for ten samples. |
| cumhbd | Computes the realized inbreeding coefficient |
| cumkin | Computes the realized kinship |
| genoex | Subset of a dataset with genotypes for 20 sheeps |
| genosim | Example from a small simulated data set |
| hbd1 | The result of local IBD probabilities for a pair of individuals among the 18 cows from the Amsterdam Island. |
| hbd2 | The result of local IBD probabilities for a pair of individuals among the 18 cows from the Amsterdam Island (recent only). |
| kintaf_mix4l | The result of a kinship analysis on 18 cattle from the Amsterdam Island. |
| map1 | The map for local IBD probabilities for a pair of individuals among the 18 cows from the Amsterdam Island (recent only). |
| merge_zres | Merge several zres objects generated by zoorun |
| predhbd | Extracts the IBD probabilities from the kres object |
| probhbd | Extracts the HBD probabilities from the zres object |
| rara_mix10l | The result of an analysis on 22 sheeps from Rasa Aragonesa population. |
| realized | Extracts the realized autozygosity from the zres object |
| rohbd | Extracts the HBD segments from the zres object |
| soay_mix10l | The result of an analysis on 110 sheeps from the Soay population. |
| typs | Subset of a dataset with genotypes for 6 individuals from a cattle population. |
| typsfrq | A file with marker allele frequencies for the cattle population. |
| update_zres | Update one main zres object with new results |
| wilt_mix10l | The result of an analysis on 23 sheeps from Wiltshire population. |
| zoodata | Read the genotype data file |
| zookin | Use the ZooRoH model to estimate kinship between pairs of individuals |
| zoomodel | Define the model for the RZooRoH |
| zooplot_hbdseg | Plot HBD segments identified with the ZooROH model |
| zooplot_individuals | Plot individual curves with proportion of the genome in each HBD class or cumulated proportion in HBD classes with rates smaller than a threshold. |
| zooplot_partitioning | Plot the partitioning of the genome in different HBD classes for each individual |
| zooplot_prophbd | Plot proportion of the genome associated with different HBD classes |
| zoorun | Run the ZooRoH model |