| align.networks | Function to align the adjacency matrices of graphs/networks |
| ATLEASTK.int | ATLEASTK network integration |
| lalign.networks | Function to align a list of adjacency matrices of graphs/networks |
| MAX.int | Maximum (MAX) network integration |
| MIN.int | Minimum (MIN) network integration |
| MS.UA.int | "Memory Saving" Unweighted Average (UA) network integration |
| PUA.int | Per-edge Unweighted Average (PUA) network integration |
| UA.int | Unweighted Average (UA) network integration |
| WA.int | Weighted Average (WA) network integration |
| WAP.int | Weighted Average Per-class (WAP) network integration |