# Process Orbitrap Isotopocule Data

## Documentation for package ‘isoorbi’ version 1.3.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

orbi_add_blocks_to_plot | Plot blocks background
orbi_adjust_block | Manually adjust block delimiters
orbi_analyze_shot_noise | Shot noise calculation
orbi_calculate_ratios | Calculate direct isotopocule ratios
orbi_calculate_summarized_ratio | Calculate isotopocule ratio
orbi_default_theme | Default isoorbi plotting theme
orbi_define_basepeak | Define the denominator for ratio calculation
orbi_define_blocks_for_dual_inlet | Binning raw data into blocks for dual inlet analyses
orbi_define_block_for_flow_injection | Define data block for flow injection
orbi_export_data_to_excel | Export data frame to excel
orbi_filter_flagged_data | Filter out flagged data
orbi_filter_isox | Basic generic filter for IsoX data
orbi_filter_satellite_peaks | Function replaced by 'orbi_flag_satellite_peaks()'
orbi_filter_scan_intensity | Function replaced by 'orbi_flag_outliers()'
orbi_filter_weak_isotopocules | Function replaced by 'orbi_flag_weak_isotopocules()'
orbi_find_isox | Find isox files
orbi_flag_outliers | Flag outlier scans
orbi_flag_satellite_peaks | Flag minor satellite peaks
orbi_flag_weak_isotopocules | Flag weak isotopocules
orbi_get_blocks_info | Summarize blocks info
orbi_get_isotopocule_coverage | Calculate isotopocule coverage
orbi_get_settings | Get all isoorbi package settings
orbi_plot_isotopocule_coverage | Plot isotopocule coverage
orbi_plot_raw_data | Visualize raw data
orbi_plot_satellite_peaks | Visualize satellite peaks
orbi_plot_shot_noise | Make a shot noise plot
orbi_read_isox | Read IsoX file
orbi_segment_blocks | Segment data blocks
orbi_set_settings | Set package settings
orbi_simplify_isox | Simplify IsoX data
orbi_summarize_results | Generate the results table