Statistical Methods for Survival Data with Dependent Censoring

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Documentation for package ‘depCensoring’ version 0.1.3

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boot.nonparTrans Nonparametric bootstrap approach for a Semiparametric transformation model under dependent censpring
Bvprob Compute bivariate survival probability
chol2par Transform Cholesky decomposition to covariance matrix
chol2par.elem Transform Cholesky decomposition to covariance matrix parameter element.
cr.lik Competing risk likelihood function.
dat.sim.reg.comp.risks Data generation function for competing risks data
dchol2par Derivative of transform Cholesky decomposition to covariance matrix.
dchol2par.elem Derivative of transform Cholesky decomposition to covariance matrix element.
Distance Distance between vectors
DYJtrans Derivative of the Yeo-Johnson transformation function
estimate.cf Estimate the control function
estimate.cmprsk Estimate the competing risks model of Rutten, Willems et al. (20XX).
IYJtrans Inverse Yeo-Johnson transformation function
LikF.cmprsk Second step log-likelihood function.
likF.cmprsk.Cholesky Wrapper implementing likelihood function using Cholesky factorization.
LikGamma1 First step log-likelihood function for Z continuous
LikGamma2 First step log-likelihood function for Z binary.
LikI.bis Second likelihood function needed to fit the independence model in the second step of the estimation procedure.
LikI.cmprsk Second step log-likelihood function under independence assumption.
LikI.cmprsk.Cholesky Wrapper implementing likelihood function assuming independence between competing risks and censoring using Cholesky factorization.
likIFG.cmprsk.Cholesky Full likelihood (including estimation of control function).
loglike.clayton.unconstrained Log-likelihood function for the Clayton copula.
loglike.frank.unconstrained Log-likelihood function for the Frank copula.
loglike.gaussian.unconstrained Log-likelihood function for the Gaussian copula.
loglike.gumbel.unconstrained Log-likelihood function for the Gumbel copula.
loglike.indep.unconstrained Log-likelihood function for the independence copula.
log_transform Logarithmic transformation function.
Longfun Change H to long format
NonParTrans Fit a semiparametric transformation model for dependent censoring
optimlikelihood Fit the dependent censoring models.
ParamCop Estimation of a parametric dependent censoring model without covariates.
power_transform Power transformation function.
ScoreEqn Score equations of finite parameters
SearchIndicate Search function
SolveH Estimate a nonparametric transformation function
SolveHt1 Estimating equation for Ht1
SolveScore Estimate finite parameters based on score equations
TCsim Function to simulate (Y,Delta) from the copula based model for (T,C).
uniformize.data Standardize data format
variance.cmprsk Compute the variance of the estimates.
YJtrans Yeo-Johnson transformation function