Mixture fMRI Clustering Analysis

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Documentation for package ‘MixfMRI’ version 0.1-4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Code demos. Use demo() to run them.

Help Pages

MixfMRI-package	fMRI Clustering Analysis
.FC.CT	Sets of controls in MixfMRI
apecma.step.gbd	Main algorithms implemented in fclust
cba.cor	Generalized Cluster-Based Analysis (CBA) Method
cba.cor.2d	Generalized Cluster-Based Analysis (CBA) Method
cba.cor.3d	Generalized Cluster-Based Analysis (CBA) Method
cluster.threshold	Cluster threshold an array.
cluster_mass	Cluster threshold an array.
cov.logit.ETA	Covariance Matrices of Logit ETA
cov.logit.z	Covariance Matrices
cov.param	Covariance Matrices
cov.post.z	Covariance Matrices
dmixpval	Density function of p-values
dpval	Density function of p-values
EC.3D	Expected Euler Characteristic for a 3D Random Field
ecm.step.gbd	Main algorithms implemented in fclust
em.step.gbd	Main algorithms implemented in fclust
fclust	Main MixfMRI function
fdr.bh.p1	False Discovery Rates for Spatial Signals using Benjamini and Heller (2007)
fdr.bh.p2	False Discovery Rates for Spatial Signals using Benjamini and Heller (2007)
gcv.smooth2d	Generate datasets with smoothing for MixfMRI simulations
gendataset	Generate datasets for MixfMRI simulations
initial.em.gbd	Main initialization functions
initial.RndEM.gbd	Main initialization functions
lmt.I	Likelihood Mixture Tests with Identity Cov Matrix or Only p-values
lmt.pv	Likelihood Mixture Tests with Identity Cov Matrix or Only p-values
logor.stat	Compute Statistics for Log Odds Ratio of Posterior Probability
lrt	Likelihood ratio tests
lrt.betaab	Likelihood ratio tests
lrt.betamean	Likelihood ratio tests
lrt2	Likelihood ratio tests
MixfMRI	fMRI Clustering Analysis
PARAM	Main MixfMRI function
PARAM.org	Main MixfMRI function
plotfclust	Main plotting function
plotfclustpv	Main plotting function
plotpv	Main plotting function
plotpvlegend	Main plotting function
post.prob	Covariance Matrices
print.fclust	Print fclust related outputs
pstats	Example datasets in MixfMRI
pval.2d.complex	Example datasets in MixfMRI
pval.2d.mag	Example datasets in MixfMRI
qvalue	Q-values using Benjamini and Hochberg (1995)
set.global	Main MixfMRI function
shepp0fMRI	Example datasets in MixfMRI
shepp1fMRI	Example datasets in MixfMRI
shepp2fMRI	Example datasets in MixfMRI
sheppAnat	Example datasets in MixfMRI
summarized.overlap	Summarized Overlap
Threshold.Bonferroni	Calculates Bonferroni Threshold
Threshold.FDR	False Discovery Rate (FDR) Threshold
Threshold.RF	Random Field Theory Thersholds.
toy1	Example datasets in MixfMRI
toy2	Example datasets in MixfMRI