git clone https://github.com/jake-bioinfo/minimapR.git
R CMD INSTALL minimapR
This package requires Git to be installed on your system. Git is used for cloning repositories.
brew install git
.sudo apt-get install git
for Debian-based systems.Ensure that Git is included in your system PATH so that it can be accessed from the command line.
This package is based on the work of Heng Li. It is a wrapper for a package written by him ‘minimap2’ http://liheng.org/ https://github.com/lh3/minimap2
Citations
Li, H. (2018). Minimap2: pairwise alignment for nucleotide sequences. Bioinformatics, 34:3094-3100. doi:10.1093/bioinformatics/bty191
Li, H. (2021). New strategies to improve minimap2 alignment accuracy. Bioinformatics, 37:4572-4574. doi:10.1093/bioinformatics/btab705