castgen: Estimate Sample Size for Population Genomic Studies
Estimate sample sizes needed to capture target levels of
genetic diversity from a population (multivariate allele frequencies)
for applications like germplasm conservation and breeding efforts.
Compares bootstrap samples to a full population using linear
regression, employing the R-squared value to represent the proportion
of diversity captured. Iteratively increases sample size until a
user-defined target R-squared is met. Offers a parallelized R
implementation of a previously developed 'python' method. All ploidy
levels are supported. For more details, see Sandercock et al. (2024) <doi:10.1073/pnas.2403505121>.
Documentation:
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Package source: |
castgen_1.0.2.tar.gz |
Windows binaries: |
r-devel: castgen_1.0.2.zip, r-release: not available, r-oldrel: not available |
macOS binaries: |
r-devel (arm64): not available, r-release (arm64): not available, r-oldrel (arm64): not available, r-devel (x86_64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available |
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