CRAN Package Check Results for Package spqdep

Last updated on 2025-04-04 12:52:41 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	0.1.3.6	6.72	210.23	216.95	OK
r-devel-linux-x86_64-debian-gcc	0.1.3.6	4.19	147.61	151.80	OK
r-devel-linux-x86_64-fedora-clang	0.1.3.6			366.54	OK
r-devel-linux-x86_64-fedora-gcc	0.1.3.6			385.24	OK
r-devel-macos-arm64	0.1.3.5			41.00	ERROR
r-devel-macos-x86_64	0.1.3.5			220.00	NOTE
r-devel-windows-x86_64	0.1.3.6	9.00	252.00	261.00	OK
r-patched-linux-x86_64	0.1.3.5	7.06	69.31	76.37	ERROR
r-release-linux-x86_64	0.1.3.6	5.87	195.61	201.48	OK
r-release-macos-arm64	0.1.3.5			127.00	OK
r-release-macos-x86_64	0.1.3.5			220.00	OK
r-release-windows-x86_64	0.1.3.6	9.00	245.00	254.00	OK
r-oldrel-macos-arm64	0.1.3.5				OK
r-oldrel-macos-x86_64	0.1.3.5			230.00	OK
r-oldrel-windows-x86_64	0.1.3.6	10.00	211.00	221.00	OK

Check Details

Version: 0.1.3.5
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘summary.spjctest.R’ ‘summary.spqtest.R’ Flavors: r-devel-macos-arm64, r-devel-macos-x86_64, r-patched-linux-x86_64

Version: 0.1.3.5
Check: examples
Result: ERROR Running examples in ‘spqdep-Ex.R’ failed The error most likely occurred in: > ### Name: Q.map.test > ### Title: Compute the QE and QI tests of Equivalence and Independence > ### between maps > ### Aliases: Q.map.test > > ### ** Examples > > > # Case 1: > N <- 200 > cx <- runif(N) > cy <- runif(N) > x <- cbind(cx,cy) > listw <- spdep::nb2listw(spdep::knn2nb( + spdep::knearneigh(cbind(cx,cy), k = 4))) > p <- c(1/6, 3/6, 2/6) > rho = 0.5 > QY1 <- dgp.spq(p = p, listw = listw, rho = rho) > rho = 0.8 > QY2 <- dgp.spq(p = p, listw = listw, rho = rho) > dt = data.frame(QY1,QY2) > m = 3 > r = 1 > formula <- ~ QY1 + QY2 > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 271.44, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 69.795, df = 81, p-value = 0.8083 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap, ci=.6) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap[[1]]$mh) > summary(qmap[[1]]$mh) Characteristics of m-surrounding: Number of m-surrounding (R): 90 Length of m-surrounding (m): 3 Number no-symbolized observations: 12 List of no-symbolized observations: 8 62 66 69 80 85 117 122 130 146 191 199 List of the degree overlaping: There are 2 m-surrounding that have intersection with 0 m-surrounding There are 12 m-surrounding that have intersection with 1 m-surrounding There are 76 m-surrounding that have intersection with 2 m-surrounding Mean degree of overlaping: 1.8222 > > control <- list(dtmaxknn = 20) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="permutations", control = control) Warning in Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, : The ratio between the number of symbolized observations and the number of symbols is lower than 5. > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QE = 283.51, df = 26, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QI = 228.39, df = 676, p-value = 1 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. > plot(qmap[[1]]$mh) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations") > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QE = 294.45, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QI = 80.582, df = 81, p-value = 0.4922 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 271.44, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 69.795, df = 81, p-value = 0.8083 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > > # Case 2: > data(provinces_spain) > # sf::sf_use_s2(FALSE) > m = 3 > r = 1 > > provinces_spain$Mal2Fml <- factor(provinces_spain$Mal2Fml > 100) > levels(provinces_spain$Mal2Fml) = c("men","woman") > provinces_spain$Coast <- factor(provinces_spain$Coast) > levels(provinces_spain$Coast) = c("no","yes") > formula <- ~ Coast + Mal2Fml > qmap <- Q.map.test(formula = formula, data = provinces_spain, m = m, r = r, + type ="combinations") Error in UseMethod("units") : no applicable method for 'units' applied to an object of class "NULL" Calls: Q.map.test -> m.surround -> rbind -> rbind -> units Execution halted Flavor: r-devel-macos-arm64

Version: 0.1.3.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘user-guide.Rmd’ using rmarkdown Quitting from user-guide.Rmd:272-279 [unnamed-chunk-11] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `UseMethod()`: ! no applicable method for 'units' applied to an object of class "NULL" --- Backtrace: ▆ 1. └─spqdep::Q.test(formula = f1, data = provinces_spain, m = 3, r = 1) 2. └─spqdep::m.surround(...) 3. └─base::rbind(mdtms, rowds) 4. └─units (local) rbind(deparse.level, ...) 5. └─base::units(dots[[1]]) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'user-guide.Rmd' failed with diagnostics: no applicable method for 'units' applied to an object of class "NULL" --- failed re-building ‘user-guide.Rmd’ SUMMARY: processing the following file failed: ‘user-guide.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-macos-arm64

Version: 0.1.3.5
Check: examples
Result: ERROR Running examples in ‘spqdep-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: Q.map.test > ### Title: Compute the QE and QI tests of Equivalence and Independence > ### between maps > ### Aliases: Q.map.test > > ### ** Examples > > > # Case 1: > N <- 200 > cx <- runif(N) > cy <- runif(N) > x <- cbind(cx,cy) > listw <- spdep::nb2listw(spdep::knn2nb( + spdep::knearneigh(cbind(cx,cy), k = 4))) > p <- c(1/6, 3/6, 2/6) > rho = 0.5 > QY1 <- dgp.spq(p = p, listw = listw, rho = rho) > rho = 0.8 > QY2 <- dgp.spq(p = p, listw = listw, rho = rho) > dt = data.frame(QY1,QY2) > m = 3 > r = 1 > formula <- ~ QY1 + QY2 > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 259.35, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 57.683, df = 81, p-value = 0.9768 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. > plot(qmap, ci=.6) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap[[1]]$mh) > summary(qmap[[1]]$mh) Characteristics of m-surrounding: Number of m-surrounding (R): 90 Length of m-surrounding (m): 3 Number no-symbolized observations: 12 List of no-symbolized observations: 8 62 66 69 80 85 117 122 130 146 191 199 List of the degree overlaping: There are 2 m-surrounding that have intersection with 0 m-surrounding There are 12 m-surrounding that have intersection with 1 m-surrounding There are 76 m-surrounding that have intersection with 2 m-surrounding Mean degree of overlaping: 1.8222 > > control <- list(dtmaxknn = 20) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="permutations", control = control) Warning in Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, : The ratio between the number of symbolized observations and the number of symbols is lower than 5. > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QE = 274.12, df = 26, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QI = 224.62, df = 676, p-value = 1 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. > plot(qmap[[1]]$mh) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations") > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QE = 284.9, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QI = 58.648, df = 81, p-value = 0.971 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 259.35, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 57.683, df = 81, p-value = 0.9768 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. > > # Case 2: > data(provinces_spain) > # sf::sf_use_s2(FALSE) > m = 3 > r = 1 > > provinces_spain$Mal2Fml <- factor(provinces_spain$Mal2Fml > 100) > levels(provinces_spain$Mal2Fml) = c("men","woman") > provinces_spain$Coast <- factor(provinces_spain$Coast) > levels(provinces_spain$Coast) = c("no","yes") > formula <- ~ Coast + Mal2Fml > qmap <- Q.map.test(formula = formula, data = provinces_spain, m = m, r = r, + type ="combinations") Error in UseMethod("units") : no applicable method for 'units' applied to an object of class "NULL" Calls: Q.map.test -> m.surround -> rbind -> rbind -> units Execution halted Flavor: r-patched-linux-x86_64

Version: 0.1.3.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘user-guide.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28828 bytes Input file size = 28942 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21296 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21296 Output IDAT size = 21296 bytes (7532 bytes decrease) Output file size = 21374 bytes (7568 bytes = 26.15% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29819 bytes Input file size = 29933 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27237 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27237 Output IDAT size = 27237 bytes (2582 bytes decrease) Output file size = 27315 bytes (2618 bytes = 8.75% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh prune-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28643 bytes Input file size = 28757 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25872 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25872 Output IDAT size = 25872 bytes (2771 bytes decrease) Output file size = 25950 bytes (2807 bytes = 9.76% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28176 bytes Input file size = 28290 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20480 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20480 Output IDAT size = 20480 bytes (7696 bytes decrease) Output file size = 20558 bytes (7732 bytes = 27.33% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21604 bytes Input file size = 21706 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16191 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16191 Output IDAT size = 16191 bytes (5413 bytes decrease) Output file size = 16269 bytes (5437 bytes = 25.05% decrease) Quitting from user-guide.Rmd:272-279 [unnamed-chunk-11] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `UseMethod()`: ! no applicable method for 'units' applied to an object of class "NULL" --- Backtrace: ▆ 1. └─spqdep::Q.test(formula = f1, data = provinces_spain, m = 3, r = 1) 2. └─spqdep::m.surround(...) 3. └─base::rbind(mdtms, rowds) 4. └─units (local) rbind(deparse.level, ...) 5. └─base::units(dots[[1]]) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'user-guide.Rmd' failed with diagnostics: no applicable method for 'units' applied to an object of class "NULL" --- failed re-building ‘user-guide.Rmd’ SUMMARY: processing the following file failed: ‘user-guide.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-patched-linux-x86_64