Last updated on 2025-05-19 01:50:00 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.5 | 17.44 | 138.00 | 155.44 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.5 | 11.11 | 93.79 | 104.90 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.5 | 247.81 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.5 | 258.68 | OK | |||
| r-devel-windows-x86_64 | 1.0.5 | 19.00 | 244.00 | 263.00 | OK | |
| r-patched-linux-x86_64 | 1.0.5 | 18.58 | 124.83 | 143.41 | OK | |
| r-release-linux-x86_64 | 1.0.5 | 15.06 | 123.68 | 138.74 | OK | |
| r-release-macos-arm64 | 1.0.5 | 168.00 | OK | |||
| r-release-macos-x86_64 | 1.0.5 | 192.00 | OK | |||
| r-release-windows-x86_64 | 1.0.5 | 20.00 | 382.00 | 402.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.0.5 | 116.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.5 | 219.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.5 | 25.00 | 260.00 | 285.00 | OK |
Version: 1.0.5
Check: examples
Result: ERROR
Running examples in 'neotoma2-Ex.R' failed
The error most likely occurred in:
> ### Name: get_datasets.default
> ### Title: Get Dataset Default
> ### Aliases: get_datasets.default
>
> ### ** Examples
>
> {
+ # To find all datasets with a min altitude of 12 and a max altitude of 25:
+ sites_12to25 <- get_datasets(altmin=12, altmax=25, limit=2)
+ # To find all datasets in Brazil
+ brazil <- '{"type": "Polygon",
+ "coordinates": [[
+ [-73.125, -9.102096738726443],
+ [-56.953125,-33.137551192346145],
+ [-36.5625,-7.710991655433217],
+ [-68.203125,13.923403897723347],
+ [-73.125,-9.102096738726443]]]}'
+ brazil_datasets <- get_datasets(loc = brazil[1], limit=2)
+ }
Warning in options(scipen = 9999999) :
invalid 'scipen' 9999999, used 9999
Error in parseURL(base_url, ...) :
Internal Server Error (HTTP 500). Failed to Could not connect to the Neotoma API.
Check that the path is valid, and check the current
status of the Neotoma API services at
http://data.neotomadb.org.
Calls: get_datasets ... %>% -> cleanNULL -> rapply -> parseURL -> stop_for_status
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.0.5
Check: tests
Result: ERROR
Running 'testthat.R' [86s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(neotoma2)
Attaching package: 'neotoma2'
The following object is masked from 'package:stats':
filter
>
> test_check("neotoma2")
.[ FAIL 2 | WARN 0 | SKIP 48 | PASS 16 ]
══ Skipped tests (48) ══════════════════════════════════════════════════════════
• On CRAN (48): 'test-toJSON.R:2:3', 'test_c.R:10:3',
'test_check_contacts.R:10:3', 'test_chroncontrols.R:5:3',
'test_chroncontrols.R:22:3', 'test_chroncontrols.R:36:3', 'test_clean.R:5:3',
'test_datasets.R:3:3', 'test_datasets.R:19:3', 'test_datasets.R:39:3',
'test_datasets.R:86:3', 'test_datasets.R:109:3', 'test_download.R:3:3',
'test_download.R:32:3', 'test_examples.R:3:3', 'test_filter.R:4:3',
'test_filter.R:27:3', 'test_filter.R:50:3', 'test_filter.R:74:3',
'test_filter.R:111:3', 'test_filter.R:138:3', 'test_filter.R:166:3',
'test_filter.R:192:3', 'test_filter.R:208:3', 'test_filter.R:223:3',
'test_generaltests.R:6:3', 'test_generaltests.R:17:3',
'test_generaltests.R:22:3', 'test_generaltests.R:40:3',
'test_generaltests.R:70:3', 'test_generaltests.R:78:5',
'test_generaltests.R:99:3', 'test_methods.R:3:3', 'test_plotLeaflet.r:6:3',
'test_plotLeaflet.r:18:3', 'test_samples.R:11:3', 'test_setsample.R:8:3',
'test_setsite.r:8:3', 'test_sites.R:9:3', 'test_sites.R:21:3',
'test_sites.R:37:3', 'test_sites.R:49:3', 'test_sites.R:62:3',
'test_sites.R:90:3', 'test_specimens.R:3:3', 'test_specimens.R:11:3',
'test_specimens.R:18:3', 'test_toWide.R:10:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-get_contacts.R:2:3'): Non integer x returns nothing: ───────────
<http_500/http_error/error/condition>
Error in `parseURL(baseURL, ...)`: Internal Server Error (HTTP 500). Failed to Could not connect to the Neotoma API.
Check that the path is valid, and check the current
status of the Neotoma API services at
http://data.neotomadb.org.
Backtrace:
▆
1. ├─neotoma2::get_contacts(x = "Goring") at test-get_contacts.R:2:3
2. ├─neotoma2:::get_contacts.default(x = "Goring")
3. │ ├─parseURL(baseURL, ...) %>% cleanNULL()
4. │ └─neotoma2::parseURL(baseURL, ...)
5. │ └─httr::stop_for_status(response, task = "Could not connect to the Neotoma API.\n Check that the path is valid, and check the current\n status of the Neotoma API services at\n http://data.neotomadb.org")
6. └─neotoma2:::cleanNULL(.)
7. └─base::rapply(...)
── Error ('test_generaltests.R:116:3'): Testing the publications calls. ────────
<http_500/http_error/error/condition>
Error in `parseURL(baseURL, ...)`: Internal Server Error (HTTP 500). Failed to Could not connect to the Neotoma API.
Check that the path is valid, and check the current
status of the Neotoma API services at
http://data.neotomadb.org.
Backtrace:
▆
1. ├─neotoma2::get_publications(search = "pollen") at test_generaltests.R:116:3
2. ├─neotoma2:::get_publications.default(search = "pollen")
3. │ ├─... %>% pluck("result")
4. │ └─neotoma2::parseURL(baseURL, ...)
5. │ └─httr::stop_for_status(response, task = "Could not connect to the Neotoma API.\n Check that the path is valid, and check the current\n status of the Neotoma API services at\n http://data.neotomadb.org")
6. ├─purrr::pluck(., "result")
7. │ └─purrr:::pluck_raw(.x, list2(...), .default = .default)
8. ├─purrr::pluck(., "data")
9. │ └─purrr:::pluck_raw(.x, list2(...), .default = .default)
10. └─neotoma2:::cleanNULL(.)
11. └─base::rapply(...)
[ FAIL 2 | WARN 0 | SKIP 48 | PASS 16 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.0.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'neotoma2-package.Rmd' using rmarkdown
Quitting from neotoma2-package.Rmd:94-97 [getsitename]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `parseURL()`:
! Internal Server Error (HTTP 500). Failed to Could not connect to the Neotoma API.
Check that the path is valid, and check the current
status of the Neotoma API services at
http://data.neotomadb.org.
---
Backtrace:
▆
1. ├─neotoma2::get_sites(sitename = "Alexander Lake")
2. └─neotoma2:::get_sites.default(sitename = "Alexander Lake")
3. └─neotoma2::parseURL(base_url, ...)
4. └─httr::stop_for_status(response, task = "Could not connect to the Neotoma API.\n Check that the path is valid, and check the current\n status of the Neotoma API services at\n http://data.neotomadb.org")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'neotoma2-package.Rmd' failed with diagnostics:
Internal Server Error (HTTP 500). Failed to Could not connect to the Neotoma API.
Check that the path is valid, and check the current
status of the Neotoma API services at
http://data.neotomadb.org.
--- failed re-building 'neotoma2-package.Rmd'
SUMMARY: processing the following file failed:
'neotoma2-package.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64