CRAN Package Check Results for Package handwriterRF

Last updated on 2025-04-04 12:52:30 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.1.1	4.05	599.80	603.85	OK
r-devel-linux-x86_64-debian-gcc	1.1.1	2.69	353.58	356.27	OK
r-devel-linux-x86_64-fedora-clang	1.1.1			993.25	OK
r-devel-linux-x86_64-fedora-gcc	1.1.1			944.12	OK
r-devel-macos-arm64	1.1.1			180.00	OK
r-devel-macos-x86_64	1.1.1			279.00	OK
r-devel-windows-x86_64	1.1.1	6.00	781.00	787.00	OK
r-patched-linux-x86_64	1.1.1	4.49	516.25	520.74	OK
r-release-linux-x86_64	1.1.1	3.72	571.83	575.55	OK
r-release-macos-arm64	1.1.1			191.00	OK
r-release-macos-x86_64	1.1.1			365.00	OK
r-release-windows-x86_64	1.1.1	6.00	763.00	769.00	OK
r-oldrel-macos-arm64	1.1.1			173.00	ERROR
r-oldrel-macos-x86_64	1.1.1			320.00	ERROR
r-oldrel-windows-x86_64	1.1.1	6.00	1034.00	1040.00	ERROR

Check Details

Version: 1.1.1
Check: tests
Result: ERROR Running ‘testthat.R’ [104s/100s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(handwriterRF) > > test_check("handwriterRF") Copying samples to project directory > docs... Estimating writer profiles... Listing documents to be processed... Creating output directory... Directory already exists. Processing document w0030_s01_pWOZ_r01.png... path in readPNGBinary: /var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T//RtmpCJcNZs/comparison/docs/w0030_s01_pWOZ_r01.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document w0030_s01_pWOZ_r01.png... Processing document w0030_s01_pWOZ_r02.png... path in readPNGBinary: /var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T//RtmpCJcNZs/comparison/docs/w0030_s01_pWOZ_r02.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document w0030_s01_pWOZ_r02.png... All documents were successfully processed... Loading graphs for w0030_s01_pWOZ_r01_proclist.rds Getting cluster assignments for w0030_s01_pWOZ_r01 Saving cluster assignments for w0030_s01_pWOZ_r01 Loading graphs for w0030_s01_pWOZ_r02_proclist.rds Getting cluster assignments for w0030_s01_pWOZ_r02 Saving cluster assignments for w0030_s01_pWOZ_r02 Calculating distance between samples... Calculating similarity score... Calculating distance between samples... Calculating similarity score... Calculating distance between samples... Calculating similarity score... Calculating distance between samples... Calculating similarity score... Calculating SLR... Calculating distance between samples... Calculating similarity score... Calculating SLR... Copying samples to project directory > docs... Estimating writer profiles... Listing documents to be processed... Creating output directory... Directory already exists. Processing document w0030_s01_pWOZ_r01.png... path in readPNGBinary: /var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T//RtmpCJcNZs/comparison/docs/w0030_s01_pWOZ_r01.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document w0030_s01_pWOZ_r01.png... Processing document w0030_s01_pWOZ_r02.png... path in readPNGBinary: /var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T//RtmpCJcNZs/comparison/docs/w0030_s01_pWOZ_r02.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document w0030_s01_pWOZ_r02.png... All documents were successfully processed... Loading graphs for w0030_s01_pWOZ_r01_proclist.rds Getting cluster assignments for w0030_s01_pWOZ_r01 Saving cluster assignments for w0030_s01_pWOZ_r01 Loading graphs for w0030_s01_pWOZ_r02_proclist.rds Getting cluster assignments for w0030_s01_pWOZ_r02 Saving cluster assignments for w0030_s01_pWOZ_r02 Calculating distance between samples... Calculating similarity score... Calculating SLR... Copying samples to project directory > docs... Estimating writer profiles... Listing documents to be processed... Creating output directory... Directory already exists. Processing document w0030_s01_pWOZ_r01.png... path in readPNGBinary: /var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T//RtmpCJcNZs/comparison/docs/w0030_s01_pWOZ_r01.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document w0030_s01_pWOZ_r01.png... Processing document w0238_s01_pWOZ_r02.png... path in readPNGBinary: /var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T//RtmpCJcNZs/comparison/docs/w0238_s01_pWOZ_r02.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document w0238_s01_pWOZ_r02.png... All documents were successfully processed... Loading graphs for w0030_s01_pWOZ_r01_proclist.rds Getting cluster assignments for w0030_s01_pWOZ_r01 Saving cluster assignments for w0030_s01_pWOZ_r01 Loading graphs for w0238_s01_pWOZ_r02_proclist.rds Getting cluster assignments for w0238_s01_pWOZ_r02 Saving cluster assignments for w0238_s01_pWOZ_r02 Calculating distance between samples... Calculating similarity score... Calculating SLR... Copying samples to project directory > docs... Estimating writer profiles... Listing documents to be processed... Creating output directory... Directory already exists. All documents have been processed or flagged as problem files. Loading graphs for w0030_s01_pWOZ_r01_proclist.rds Cluster assignments already exist for w0030_s01_pWOZ_r01 Loading graphs for w0030_s01_pWOZ_r02_proclist.rds Cluster assignments already exist for w0030_s01_pWOZ_r02 Calculating distance between samples... Calculating similarity score... Calculating SLR... Samples have the same file name so they will be renamed 'sample1.png' and 'sample2.png'. Copying samples to project directory > docs... Estimating writer profiles... Listing documents to be processed... Creating output directory... Directory already exists. Processing document sample1.png... path in readPNGBinary: /var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T//RtmpCJcNZs/comparison/docs/sample1.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document sample1.png... Processing document sample2.png... path in readPNGBinary: /var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T//RtmpCJcNZs/comparison/docs/sample2.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document sample2.png... All documents were successfully processed... Loading graphs for sample1_proclist.rds Getting cluster assignments for sample1 Saving cluster assignments for sample1 Loading graphs for sample2_proclist.rds Getting cluster assignments for sample2 Saving cluster assignments for sample2 Calculating distance between samples... Calculating similarity score... Calculating SLR... [ FAIL 7 | WARN 0 | SKIP 0 | PASS 41 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compare.R:49:3'): Compare writer profiles works on unknown writers when score_only is FALSE ── `actual` (`actual`) not equal to `expected` (`expected`). actual vs expected slr - actual[1, ] 254.889367 + expected[1, ] 254.896611 - actual[2, ] 108.363010 + expected[2, ] 108.363186 - actual[3, ] 43.335689 + expected[3, ] 43.336182 - actual[4, ] 1.270565 + expected[4, ] 1.270562 - actual[5, ] 11.530177 + expected[5, ] 11.530097 - actual[6, ] 17.914962 + expected[6, ] 17.915382 actual$slr | expected$slr [1] 254.8893665 - 254.8966114 [1] [2] 108.3630096 - 108.3631863 [2] [3] 43.3356887 - 43.3361817 [3] [4] 1.2705652 - 1.2705621 [4] [5] 11.5301773 - 11.5300965 [5] [6] 17.9149619 - 17.9153823 [6] ── Failure ('test-compare.R:61:3'): Compare writer profiles works on known writers when score_only is FALSE ── `actual` (`actual`) not equal to `expected` (`expected`). actual vs expected slr - actual[1, ] 254.889367 + expected[1, ] 254.896611 - actual[2, ] 108.363010 + expected[2, ] 108.363186 - actual[3, ] 43.335689 + expected[3, ] 43.336182 - actual[4, ] 1.270565 + expected[4, ] 1.270562 - actual[5, ] 11.530177 + expected[5, ] 11.530097 - actual[6, ] 17.914962 + expected[6, ] 17.915382 actual$slr | expected$slr [1] 254.8893665 - 254.8966114 [1] [2] 108.3630096 - 108.3631863 [2] [3] 43.3356887 - 43.3361817 [3] [4] 1.2705652 - 1.2705621 [4] [5] 11.5301773 - 11.5300965 [5] [6] 17.9149619 - 17.9153823 [6] ── Failure ('test-slrs.R:16:3'): Calculate SLR works on w0030 samples ────────── `actual` (`actual`) not equal to `expected` (`expected`). actual vs expected slr - actual[1, ] 20.00722 + expected[1, ] 20.00790 `actual$slr`: 20.00722 `expected$slr`: 20.00790 ── Failure ('test-slrs.R:34:3'): Calculate SLR works on w0030 versus w0238 samples ── `actual` (`actual`) not equal to `expected` (`expected`). actual vs expected slr - actual[1, ] 0.5060655 + expected[1, ] 0.5060652 `actual$slr`: 0.50606550 `expected$slr`: 0.50606524 ── Failure ('test-slrs.R:49:3'): Calculate SLR works on w0030 samples in project directory ── `actual` (`actual`) not equal to `expected` (`expected`). actual vs expected slr - actual[1, ] 20.00722 + expected[1, ] 20.00790 `actual$slr`: 20.00722 `expected$slr`: 20.00790 ── Failure ('test-slrs.R:86:3'): Calculate SLRs works if samples in different folders have the same file name ── `actual` (`actual`) not equal to `expected` (`expected`). actual vs expected slr - actual[1, ] 30.88832 + expected[1, ] 30.88831 `actual$slr`: 30.888321 `expected$slr`: 30.888307 ── Failure ('test-slrs.R:151:3'): Make densities works with ranger package ───── `actual` (`actual`) not equal to `expected` (`expected`). `actual$same_writer` is length 7 `expected$same_writer` is length 8 names(actual$same_writer) | names(expected$same_writer) [2] "y" | "y" [2] [3] "bw" | "bw" [3] [4] "n" | "n" [4] [5] "call" - "old.coords" [5] [6] "data.name" - "call" [6] [7] "has.na" - "data.name" [7] - "has.na" [8] actual$same_writer$y | expected$same_writer$y [1] 0.00033467 - 0.00033457 [1] [2] 0.00034180 - 0.00034170 [2] [3] 0.00034907 - 0.00034896 [3] [4] 0.00035647 - 0.00035637 [4] [5] 0.00036403 - 0.00036392 [5] [6] 0.00037171 - 0.00037160 [6] [7] 0.00037956 - 0.00037944 [7] [8] 0.00038754 - 0.00038742 [8] [9] 0.00039569 - 0.00039557 [9] [10] 0.00040397 - 0.00040385 [10] ... ... ... and 9990 more ... `actual$same_writer$old.coords` is absent `expected$same_writer$old.coords` is a logical vector (FALSE) `actual$diff_writer` is length 7 `expected$diff_writer` is length 8 names(actual$diff_writer) | names(expected$diff_writer) [2] "y" | "y" [2] [3] "bw" | "bw" [3] [4] "n" | "n" [4] [5] "call" - "old.coords" [5] [6] "data.name" - "call" [6] [7] "has.na" - "data.name" [7] - "has.na" [8] actual$diff_writer$y | expected$diff_writer$y [1] 0.004284978 - 0.004283563 [1] [2] 0.004397465 - 0.004396019 [2] [3] 0.004512772 - 0.004511295 [3] [4] 0.004630740 - 0.004629231 [4] [5] 0.004751621 - 0.004750078 [5] [6] 0.004875308 - 0.004873732 [6] [7] 0.005002002 - 0.005000392 [7] [8] 0.005131654 - 0.005130009 [8] [9] 0.005264410 - 0.005262730 [9] [10] 0.005400283 - 0.005398567 [10] ... ... ... and 9990 more ... `actual$diff_writer$old.coords` is absent `expected$diff_writer$old.coords` is a logical vector (FALSE) [ FAIL 7 | WARN 0 | SKIP 0 | PASS 41 ] Error: Test failures Execution halted Flavor: r-oldrel-macos-arm64

Version: 1.1.1
Check: tests
Result: ERROR Running ‘testthat.R’ [215s/202s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(handwriterRF) > > test_check("handwriterRF") Copying samples to project directory > docs... Estimating writer profiles... Listing documents to be processed... Creating output directory... Directory already exists. Processing document w0030_s01_pWOZ_r01.png... path in readPNGBinary: /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//RtmpWladsH/comparison/docs/w0030_s01_pWOZ_r01.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document w0030_s01_pWOZ_r01.png... Processing document w0030_s01_pWOZ_r02.png... path in readPNGBinary: /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//RtmpWladsH/comparison/docs/w0030_s01_pWOZ_r02.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document w0030_s01_pWOZ_r02.png... All documents were successfully processed... Loading graphs for w0030_s01_pWOZ_r01_proclist.rds Getting cluster assignments for w0030_s01_pWOZ_r01 Saving cluster assignments for w0030_s01_pWOZ_r01 Loading graphs for w0030_s01_pWOZ_r02_proclist.rds Getting cluster assignments for w0030_s01_pWOZ_r02 Saving cluster assignments for w0030_s01_pWOZ_r02 Calculating distance between samples... Calculating similarity score... Calculating distance between samples... Calculating similarity score... Calculating distance between samples... Calculating similarity score... Calculating distance between samples... Calculating similarity score... Calculating SLR... Calculating distance between samples... Calculating similarity score... Calculating SLR... Copying samples to project directory > docs... Estimating writer profiles... Listing documents to be processed... Creating output directory... Directory already exists. Processing document w0030_s01_pWOZ_r01.png... path in readPNGBinary: /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//RtmpWladsH/comparison/docs/w0030_s01_pWOZ_r01.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document w0030_s01_pWOZ_r01.png... Processing document w0030_s01_pWOZ_r02.png... path in readPNGBinary: /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//RtmpWladsH/comparison/docs/w0030_s01_pWOZ_r02.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document w0030_s01_pWOZ_r02.png... All documents were successfully processed... Loading graphs for w0030_s01_pWOZ_r01_proclist.rds Getting cluster assignments for w0030_s01_pWOZ_r01 Saving cluster assignments for w0030_s01_pWOZ_r01 Loading graphs for w0030_s01_pWOZ_r02_proclist.rds Getting cluster assignments for w0030_s01_pWOZ_r02 Saving cluster assignments for w0030_s01_pWOZ_r02 Calculating distance between samples... Calculating similarity score... Calculating SLR... Copying samples to project directory > docs... Estimating writer profiles... Listing documents to be processed... Creating output directory... Directory already exists. Processing document w0030_s01_pWOZ_r01.png... path in readPNGBinary: /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//RtmpWladsH/comparison/docs/w0030_s01_pWOZ_r01.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document w0030_s01_pWOZ_r01.png... Processing document w0238_s01_pWOZ_r02.png... path in readPNGBinary: /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//RtmpWladsH/comparison/docs/w0238_s01_pWOZ_r02.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document w0238_s01_pWOZ_r02.png... All documents were successfully processed... Loading graphs for w0030_s01_pWOZ_r01_proclist.rds Getting cluster assignments for w0030_s01_pWOZ_r01 Saving cluster assignments for w0030_s01_pWOZ_r01 Loading graphs for w0238_s01_pWOZ_r02_proclist.rds Getting cluster assignments for w0238_s01_pWOZ_r02 Saving cluster assignments for w0238_s01_pWOZ_r02 Calculating distance between samples... Calculating similarity score... Calculating SLR... Copying samples to project directory > docs... Estimating writer profiles... Listing documents to be processed... Creating output directory... Directory already exists. All documents have been processed or flagged as problem files. Loading graphs for w0030_s01_pWOZ_r01_proclist.rds Cluster assignments already exist for w0030_s01_pWOZ_r01 Loading graphs for w0030_s01_pWOZ_r02_proclist.rds Cluster assignments already exist for w0030_s01_pWOZ_r02 Calculating distance between samples... Calculating similarity score... Calculating SLR... Samples have the same file name so they will be renamed 'sample1.png' and 'sample2.png'. Copying samples to project directory > docs... Estimating writer profiles... Listing documents to be processed... Creating output directory... Directory already exists. Processing document sample1.png... path in readPNGBinary: /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//RtmpWladsH/comparison/docs/sample1.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document sample1.png... Processing document sample2.png... path in readPNGBinary: /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//RtmpWladsH/comparison/docs/sample2.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document sample2.png... All documents were successfully processed... Loading graphs for sample1_proclist.rds Getting cluster assignments for sample1 Saving cluster assignments for sample1 Loading graphs for sample2_proclist.rds Getting cluster assignments for sample2 Saving cluster assignments for sample2 Calculating distance between samples... Calculating similarity score... Calculating SLR... [ FAIL 7 | WARN 0 | SKIP 0 | PASS 41 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compare.R:49:3'): Compare writer profiles works on unknown writers when score_only is FALSE ── `actual` (`actual`) not equal to `expected` (`expected`). actual vs expected slr - actual[1, ] 254.889367 + expected[1, ] 254.896611 - actual[2, ] 108.363010 + expected[2, ] 108.363186 - actual[3, ] 43.335689 + expected[3, ] 43.336182 - actual[4, ] 1.270565 + expected[4, ] 1.270562 - actual[5, ] 11.530177 + expected[5, ] 11.530097 - actual[6, ] 17.914962 + expected[6, ] 17.915382 actual$slr | expected$slr [1] 254.8893665 - 254.8966114 [1] [2] 108.3630096 - 108.3631863 [2] [3] 43.3356887 - 43.3361817 [3] [4] 1.2705652 - 1.2705621 [4] [5] 11.5301773 - 11.5300965 [5] [6] 17.9149619 - 17.9153823 [6] ── Failure ('test-compare.R:61:3'): Compare writer profiles works on known writers when score_only is FALSE ── `actual` (`actual`) not equal to `expected` (`expected`). actual vs expected slr - actual[1, ] 254.889367 + expected[1, ] 254.896611 - actual[2, ] 108.363010 + expected[2, ] 108.363186 - actual[3, ] 43.335689 + expected[3, ] 43.336182 - actual[4, ] 1.270565 + expected[4, ] 1.270562 - actual[5, ] 11.530177 + expected[5, ] 11.530097 - actual[6, ] 17.914962 + expected[6, ] 17.915382 actual$slr | expected$slr [1] 254.8893665 - 254.8966114 [1] [2] 108.3630096 - 108.3631863 [2] [3] 43.3356887 - 43.3361817 [3] [4] 1.2705652 - 1.2705621 [4] [5] 11.5301773 - 11.5300965 [5] [6] 17.9149619 - 17.9153823 [6] ── Failure ('test-slrs.R:16:3'): Calculate SLR works on w0030 samples ────────── `actual` (`actual`) not equal to `expected` (`expected`). actual vs expected slr - actual[1, ] 20.00722 + expected[1, ] 20.00790 `actual$slr`: 20.00722 `expected$slr`: 20.00790 ── Failure ('test-slrs.R:34:3'): Calculate SLR works on w0030 versus w0238 samples ── `actual` (`actual`) not equal to `expected` (`expected`). actual vs expected slr - actual[1, ] 0.5060655 + expected[1, ] 0.5060652 `actual$slr`: 0.50606550 `expected$slr`: 0.50606524 ── Failure ('test-slrs.R:49:3'): Calculate SLR works on w0030 samples in project directory ── `actual` (`actual`) not equal to `expected` (`expected`). actual vs expected slr - actual[1, ] 20.00722 + expected[1, ] 20.00790 `actual$slr`: 20.00722 `expected$slr`: 20.00790 ── Failure ('test-slrs.R:86:3'): Calculate SLRs works if samples in different folders have the same file name ── `actual` (`actual`) not equal to `expected` (`expected`). actual vs expected slr - actual[1, ] 30.88832 + expected[1, ] 30.88831 `actual$slr`: 30.888321 `expected$slr`: 30.888307 ── Failure ('test-slrs.R:151:3'): Make densities works with ranger package ───── `actual` (`actual`) not equal to `expected` (`expected`). `actual$same_writer` is length 7 `expected$same_writer` is length 8 names(actual$same_writer) | names(expected$same_writer) [2] "y" | "y" [2] [3] "bw" | "bw" [3] [4] "n" | "n" [4] [5] "call" - "old.coords" [5] [6] "data.name" - "call" [6] [7] "has.na" - "data.name" [7] - "has.na" [8] actual$same_writer$y | expected$same_writer$y [1] 0.00033467 - 0.00033457 [1] [2] 0.00034180 - 0.00034170 [2] [3] 0.00034907 - 0.00034896 [3] [4] 0.00035647 - 0.00035637 [4] [5] 0.00036403 - 0.00036392 [5] [6] 0.00037171 - 0.00037160 [6] [7] 0.00037956 - 0.00037944 [7] [8] 0.00038754 - 0.00038742 [8] [9] 0.00039569 - 0.00039557 [9] [10] 0.00040397 - 0.00040385 [10] ... ... ... and 9990 more ... `actual$same_writer$old.coords` is absent `expected$same_writer$old.coords` is a logical vector (FALSE) `actual$diff_writer` is length 7 `expected$diff_writer` is length 8 names(actual$diff_writer) | names(expected$diff_writer) [2] "y" | "y" [2] [3] "bw" | "bw" [3] [4] "n" | "n" [4] [5] "call" - "old.coords" [5] [6] "data.name" - "call" [6] [7] "has.na" - "data.name" [7] - "has.na" [8] actual$diff_writer$y | expected$diff_writer$y [1] 0.004284978 - 0.004283563 [1] [2] 0.004397465 - 0.004396019 [2] [3] 0.004512772 - 0.004511295 [3] [4] 0.004630740 - 0.004629231 [4] [5] 0.004751621 - 0.004750078 [5] [6] 0.004875308 - 0.004873732 [6] [7] 0.005002002 - 0.005000392 [7] [8] 0.005131654 - 0.005130009 [8] [9] 0.005264410 - 0.005262730 [9] [10] 0.005400283 - 0.005398567 [10] ... ... ... and 9990 more ... `actual$diff_writer$old.coords` is absent `expected$diff_writer$old.coords` is a logical vector (FALSE) [ FAIL 7 | WARN 0 | SKIP 0 | PASS 41 ] Error: Test failures Execution halted Flavor: r-oldrel-macos-x86_64

Version: 1.1.1
Check: tests
Result: ERROR Running 'testthat.R' [12m] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(handwriterRF) > > test_check("handwriterRF") Copying samples to project directory > docs... Estimating writer profiles... Listing documents to be processed... Creating output directory... Directory already exists. Processing document w0030_s01_pWOZ_r01.png... path in readPNGBinary: D:\temp\2025_04_02_01_50_00_3121\Rtmpi4gjPP/comparison/docs/w0030_s01_pWOZ_r01.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document w0030_s01_pWOZ_r01.png... Processing document w0030_s01_pWOZ_r02.png... path in readPNGBinary: D:\temp\2025_04_02_01_50_00_3121\Rtmpi4gjPP/comparison/docs/w0030_s01_pWOZ_r02.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document w0030_s01_pWOZ_r02.png... All documents were successfully processed... Loading graphs for w0030_s01_pWOZ_r01_proclist.rds Getting cluster assignments for w0030_s01_pWOZ_r01 Saving cluster assignments for w0030_s01_pWOZ_r01 Loading graphs for w0030_s01_pWOZ_r02_proclist.rds Getting cluster assignments for w0030_s01_pWOZ_r02 Saving cluster assignments for w0030_s01_pWOZ_r02 Calculating distance between samples... Calculating similarity score... Calculating distance between samples... Calculating similarity score... Calculating distance between samples... Calculating similarity score... Calculating distance between samples... Calculating similarity score... Calculating SLR... Calculating distance between samples... Calculating similarity score... Calculating SLR... Copying samples to project directory > docs... Estimating writer profiles... Listing documents to be processed... Creating output directory... Directory already exists. Processing document w0030_s01_pWOZ_r01.png... path in readPNGBinary: D:\temp\2025_04_02_01_50_00_3121\Rtmpi4gjPP/comparison/docs/w0030_s01_pWOZ_r01.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document w0030_s01_pWOZ_r01.png... Processing document w0030_s01_pWOZ_r02.png... path in readPNGBinary: D:\temp\2025_04_02_01_50_00_3121\Rtmpi4gjPP/comparison/docs/w0030_s01_pWOZ_r02.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document w0030_s01_pWOZ_r02.png... All documents were successfully processed... Loading graphs for w0030_s01_pWOZ_r01_proclist.rds Getting cluster assignments for w0030_s01_pWOZ_r01 Saving cluster assignments for w0030_s01_pWOZ_r01 Loading graphs for w0030_s01_pWOZ_r02_proclist.rds Getting cluster assignments for w0030_s01_pWOZ_r02 Saving cluster assignments for w0030_s01_pWOZ_r02 Calculating distance between samples... Calculating similarity score... Calculating SLR... Copying samples to project directory > docs... Estimating writer profiles... Listing documents to be processed... Creating output directory... Directory already exists. Processing document w0030_s01_pWOZ_r01.png... path in readPNGBinary: D:\temp\2025_04_02_01_50_00_3121\Rtmpi4gjPP/comparison/docs/w0030_s01_pWOZ_r01.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document w0030_s01_pWOZ_r01.png... Processing document w0238_s01_pWOZ_r02.png... path in readPNGBinary: D:\temp\2025_04_02_01_50_00_3121\Rtmpi4gjPP/comparison/docs/w0238_s01_pWOZ_r02.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document w0238_s01_pWOZ_r02.png... All documents were successfully processed... Loading graphs for w0030_s01_pWOZ_r01_proclist.rds Getting cluster assignments for w0030_s01_pWOZ_r01 Saving cluster assignments for w0030_s01_pWOZ_r01 Loading graphs for w0238_s01_pWOZ_r02_proclist.rds Getting cluster assignments for w0238_s01_pWOZ_r02 Saving cluster assignments for w0238_s01_pWOZ_r02 Calculating distance between samples... Calculating similarity score... Calculating SLR... Copying samples to project directory > docs... Estimating writer profiles... Listing documents to be processed... Creating output directory... Directory already exists. All documents have been processed or flagged as problem files. Loading graphs for w0030_s01_pWOZ_r01_proclist.rds Cluster assignments already exist for w0030_s01_pWOZ_r01 Loading graphs for w0030_s01_pWOZ_r02_proclist.rds Cluster assignments already exist for w0030_s01_pWOZ_r02 Calculating distance between samples... Calculating similarity score... Calculating SLR... Samples have the same file name so they will be renamed 'sample1.png' and 'sample2.png'. Copying samples to project directory > docs... Estimating writer profiles... Listing documents to be processed... Creating output directory... Directory already exists. Processing document sample1.png... path in readPNGBinary: D:\temp\2025_04_02_01_50_00_3121\Rtmpi4gjPP/comparison/docs/sample1.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document sample1.png... Processing document sample2.png... path in readPNGBinary: D:\temp\2025_04_02_01_50_00_3121\Rtmpi4gjPP/comparison/docs/sample2.png Starting Processing... Getting Nodes... Skeletonizing writing... Splitting document into components... Merging nodes... Finding paths... Split paths into graphs... Organizing graphs... Creating graph lists... Adding character features... Document processing complete Saving processed document sample2.png... All documents were successfully processed... Loading graphs for sample1_proclist.rds Getting cluster assignments for sample1 Saving cluster assignments for sample1 Loading graphs for sample2_proclist.rds Getting cluster assignments for sample2 Saving cluster assignments for sample2 Calculating distance between samples... Calculating similarity score... Calculating SLR... [ FAIL 7 | WARN 0 | SKIP 0 | PASS 41 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compare.R:49:3'): Compare writer profiles works on unknown writers when score_only is FALSE ── `actual` (`actual`) not equal to `expected` (`expected`). actual vs expected slr - actual[1, ] 254.889367 + expected[1, ] 254.896611 - actual[2, ] 108.363010 + expected[2, ] 108.363186 - actual[3, ] 43.335689 + expected[3, ] 43.336182 - actual[4, ] 1.270565 + expected[4, ] 1.270562 - actual[5, ] 11.530177 + expected[5, ] 11.530097 - actual[6, ] 17.914962 + expected[6, ] 17.915382 actual$slr | expected$slr [1] 254.8893665 - 254.8966114 [1] [2] 108.3630096 - 108.3631863 [2] [3] 43.3356887 - 43.3361817 [3] [4] 1.2705652 - 1.2705621 [4] [5] 11.5301773 - 11.5300965 [5] [6] 17.9149619 - 17.9153823 [6] ── Failure ('test-compare.R:61:3'): Compare writer profiles works on known writers when score_only is FALSE ── `actual` (`actual`) not equal to `expected` (`expected`). actual vs expected slr - actual[1, ] 254.889367 + expected[1, ] 254.896611 - actual[2, ] 108.363010 + expected[2, ] 108.363186 - actual[3, ] 43.335689 + expected[3, ] 43.336182 - actual[4, ] 1.270565 + expected[4, ] 1.270562 - actual[5, ] 11.530177 + expected[5, ] 11.530097 - actual[6, ] 17.914962 + expected[6, ] 17.915382 actual$slr | expected$slr [1] 254.8893665 - 254.8966114 [1] [2] 108.3630096 - 108.3631863 [2] [3] 43.3356887 - 43.3361817 [3] [4] 1.2705652 - 1.2705621 [4] [5] 11.5301773 - 11.5300965 [5] [6] 17.9149619 - 17.9153823 [6] ── Failure ('test-slrs.R:16:3'): Calculate SLR works on w0030 samples ────────── `actual` (`actual`) not equal to `expected` (`expected`). actual vs expected slr - actual[1, ] 20.00722 + expected[1, ] 20.00790 `actual$slr`: 20.00722 `expected$slr`: 20.00790 ── Failure ('test-slrs.R:34:3'): Calculate SLR works on w0030 versus w0238 samples ── `actual` (`actual`) not equal to `expected` (`expected`). actual vs expected slr - actual[1, ] 0.5060655 + expected[1, ] 0.5060652 `actual$slr`: 0.50606550 `expected$slr`: 0.50606524 ── Failure ('test-slrs.R:49:3'): Calculate SLR works on w0030 samples in project directory ── `actual` (`actual`) not equal to `expected` (`expected`). actual vs expected slr - actual[1, ] 20.00722 + expected[1, ] 20.00790 `actual$slr`: 20.00722 `expected$slr`: 20.00790 ── Failure ('test-slrs.R:86:3'): Calculate SLRs works if samples in different folders have the same file name ── `actual` (`actual`) not equal to `expected` (`expected`). actual vs expected slr - actual[1, ] 30.88832 + expected[1, ] 30.88831 `actual$slr`: 30.888321 `expected$slr`: 30.888307 ── Failure ('test-slrs.R:151:3'): Make densities works with ranger package ───── `actual` (`actual`) not equal to `expected` (`expected`). `actual$same_writer` is length 7 `expected$same_writer` is length 8 names(actual$same_writer) | names(expected$same_writer) [2] "y" | "y" [2] [3] "bw" | "bw" [3] [4] "n" | "n" [4] [5] "call" - "old.coords" [5] [6] "data.name" - "call" [6] [7] "has.na" - "data.name" [7] - "has.na" [8] actual$same_writer$y | expected$same_writer$y [1] 0.00033467 - 0.00033457 [1] [2] 0.00034180 - 0.00034170 [2] [3] 0.00034907 - 0.00034896 [3] [4] 0.00035647 - 0.00035637 [4] [5] 0.00036403 - 0.00036392 [5] [6] 0.00037171 - 0.00037160 [6] [7] 0.00037956 - 0.00037944 [7] [8] 0.00038754 - 0.00038742 [8] [9] 0.00039569 - 0.00039557 [9] [10] 0.00040397 - 0.00040385 [10] ... ... ... and 9990 more ... `actual$same_writer$old.coords` is absent `expected$same_writer$old.coords` is a logical vector (FALSE) `actual$diff_writer` is length 7 `expected$diff_writer` is length 8 names(actual$diff_writer) | names(expected$diff_writer) [2] "y" | "y" [2] [3] "bw" | "bw" [3] [4] "n" | "n" [4] [5] "call" - "old.coords" [5] [6] "data.name" - "call" [6] [7] "has.na" - "data.name" [7] - "has.na" [8] actual$diff_writer$y | expected$diff_writer$y [1] 0.004284978 - 0.004283563 [1] [2] 0.004397465 - 0.004396019 [2] [3] 0.004512772 - 0.004511295 [3] [4] 0.004630740 - 0.004629231 [4] [5] 0.004751621 - 0.004750078 [5] [6] 0.004875308 - 0.004873732 [6] [7] 0.005002002 - 0.005000392 [7] [8] 0.005131654 - 0.005130009 [8] [9] 0.005264410 - 0.005262730 [9] [10] 0.005400283 - 0.005398567 [10] ... ... ... and 9990 more ... `actual$diff_writer$old.coords` is absent `expected$diff_writer$old.coords` is a logical vector (FALSE) [ FAIL 7 | WARN 0 | SKIP 0 | PASS 41 ] Error: Test failures Execution halted Flavor: r-oldrel-windows-x86_64