Last updated on 2025-09-08 00:50:20 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2 | 2.06 | 49.46 | 51.52 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2 | 1.55 | 35.35 | 36.90 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2 | 79.01 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2 | 92.15 | NOTE | |||
| r-devel-windows-x86_64 | 1.2 | 4.00 | 128.00 | 132.00 | OK | |
| r-patched-linux-x86_64 | 1.2 | 2.00 | 46.99 | 48.99 | OK | |
| r-release-linux-x86_64 | 1.2 | 1.81 | 46.33 | 48.14 | OK | |
| r-release-macos-arm64 | 1.2 | 59.00 | OK | |||
| r-release-macos-x86_64 | 1.2 | 76.00 | OK | |||
| r-release-windows-x86_64 | 1.2 | 4.00 | 130.00 | 134.00 | OK | |
| r-oldrel-macos-arm64 | 1.2 | 45.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.2 | 102.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.2 | 5.00 | 164.00 | 169.00 | OK |
Version: 1.2
Check: examples
Result: ERROR
Running examples in ‘geneExpressionFromGEO-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getGeneExpressionFromGEO
> ### Title: Function that reads in the GEO code of a dataset, and returns
> ### the gene expression dataframe.
> ### Aliases: getGeneExpressionFromGEO
>
> ### ** Examples
>
> geneExpressionDF1 <- getGeneExpressionFromGEO("GSE47018", FALSE, FALSE)
Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/
Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/GSE47nnn/GSE47018
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Found 1 file(s)
GSE47018_series_matrix.txt.gz
HTTP 403 Forbidden.File stored at:
/tmp/RtmpMstRlP/GSE47018_series_matrix.txt.gz
Error in downloadFile(url, destfile = destfile, mode = "wb") :
Failed to download /tmp/RtmpMstRlP/GSE47018_series_matrix.txt.gz!
Calls: getGeneExpressionFromGEO ... <Anonymous> -> getAndParseGSEMatrices -> downloadFile
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘qpdf’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc