High-Performance Bioinformatics Visualizations
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Documentation for package ‘plotomics’ version 0.1.0
Help Pages
| bioheatmap | Expression heatmap |
| bioheatmap-shiny | Shiny bindings for bioheatmap |
| bioheatmapOutput | Shiny bindings for bioheatmap |
| bioprofile | Grouped categorical bar profile |
| bioprofile-shiny | Shiny bindings for bioprofile |
| bioprofileOutput | Shiny bindings for bioprofile |
| clustermap | Clustered heatmap with dendrograms |
| clustermap-shiny | Shiny bindings for clustermap |
| clustermapOutput | Shiny bindings for clustermap |
| dotplot | Marker gene dot plot |
| dotplot-shiny | Shiny bindings for dotplot |
| dotplotOutput | Shiny bindings for dotplot |
| embedding | Embedding scatter (UMAP / t-SNE / PCA) |
| embedding-shiny | Shiny bindings for embedding |
| embeddingOutput | Shiny bindings for embedding |
| heatmap_plotomics | Expression heatmap |
| hic | Hi-C contact matrix |
| hic-shiny | Shiny bindings for hic |
| hicOutput | Shiny bindings for hic |
| km | Kaplan-Meier survival curves with a number-at-risk table |
| km-shiny | Shiny bindings for km |
| kmOutput | Shiny bindings for km |
| lollipop | Protein domain lollipop |
| lollipop-shiny | Shiny bindings for lollipop |
| lollipopOutput | Shiny bindings for lollipop |
| network | Network graph |
| network-shiny | Shiny bindings for network |
| networkOutput | Shiny bindings for network |
| oncoplot | Oncoplot (OncoPrint) |
| oncoplot-shiny | Shiny bindings for oncoplot |
| oncoplotOutput | Shiny bindings for oncoplot |
| oncoplot_memo_sort | Conventional oncoplot row and column ordering |
| profile_plotomics | Grouped categorical bar profile |
| renderBioheatmap | Shiny bindings for bioheatmap |
| renderBioprofile | Shiny bindings for bioprofile |
| renderClustermap | Shiny bindings for clustermap |
| renderDotplot | Shiny bindings for dotplot |
| renderEmbedding | Shiny bindings for embedding |
| renderHic | Shiny bindings for hic |
| renderKm | Shiny bindings for km |
| renderLollipop | Shiny bindings for lollipop |
| renderNetwork | Shiny bindings for network |
| renderOncoplot | Shiny bindings for oncoplot |
| renderSpatial | Shiny bindings for spatial |
| renderTreemap | Shiny bindings for treemap |
| renderUpset | Shiny bindings for upset |
| renderViolin | Shiny bindings for violin |
| renderVolcano | Shiny bindings for volcano |
| spatial | Spatial map over a tissue image |
| spatial-shiny | Shiny bindings for spatial |
| spatialOutput | Shiny bindings for spatial |
| treemap | Gene / pathway treemap |
| treemap-shiny | Shiny bindings for treemap |
| treemapOutput | Shiny bindings for treemap |
| upset | UpSet plot of set intersections |
| upset-shiny | Shiny bindings for upset |
| upsetOutput | Shiny bindings for upset |
| upset_intersections | Exclusive set intersections from a membership matrix |
| violin | Stacked violin plot |
| violin-shiny | Shiny bindings for violin |
| violinOutput | Shiny bindings for violin |
| violin_density | Kernel densities on a shared grid |
| volcano | Volcano plot |
| volcano-shiny | Shiny bindings for volcano |
| volcanoOutput | Shiny bindings for volcano |