C D F G H J L M N O P R S V W Z
| check_names | A function check feature/group names. |
| check_path | A function to deal with potentially relative paths. |
| check_zonation | Check if Zonation is installed. |
| clean_str | Clean leading and trailing whitespaces from a given string. Additionally, all occurrences of multiple whitespaces are replaced with a single whitespace. |
| comp | Compare matrices in various ways. |
| copy_zvariant | Copy existing variant as a new 'Zvariant' object. |
| copy_zvariant-method | Copy existing variant as a new 'Zvariant' object. |
| correlation | Correlation between two matrices. |
| cost | Get cost data of a Z* object. |
| cost-method | Get cost data of a Z* object. |
| create_spp | Generate spp_file based on a directory of input rasters. |
| create_zproject | Create a new Zonation project on file system. |
| cross_jaccard | Calculate Jaccard coefficients bewteen all the RasterLayers within a single RasterStack. |
| curves | Get curves results data of a Z* object. |
| curves-method | Get curves results data of a Z* object. |
| decimalplaces | Find out the number of decimal places in a number. |
| ds_alpha | Calculate alpha value for distribution smoothing. |
| featurenames | Feature names of Zonation variant. |
| featurenames-method | Feature names of Zonation variant. |
| featurenames<- | Feature names of Zonation variant. |
| featurenames<--method | Feature names of Zonation variant. |
| features_info | Get the features info component of Zresults. |
| features_info-method | Get the features info component of Zresults. |
| file_path_relative_to | Transform an absolute path to relative path in relation to given location |
| file_path_sans_ext | Re-implementation of 'file_path_sans_ext' in 'tools'. This version can handle "." just before the file extenstion, unlike the original implementation. |
| get_dat_param | Get a specified run setting parameter value |
| get_dat_param-method | Get a specified run setting parameter value |
| get_tutorialdir | Get the directory of Zonation tutorial. |
| get_variant | Get a specified variant in a Zonation project |
| get_variant-method | Get a specified variant in a Zonation project |
| groupnames | Get group names for a class 'Zvariant' instance. |
| groupnames-method | Get group names for a class 'Zvariant' instance. |
| groupnames<- | Get group names for a class 'Zvariant' instance. |
| groupnames<--method | Get group names for a class 'Zvariant' instance. |
| groups | Get group codes of a class 'Zvariant' instance. |
| groups-method | Get group codes of a class 'Zvariant' instance. |
| groups<- | Get group codes of a class 'Zvariant' instance. |
| groups<--method | Get group codes of a class 'Zvariant' instance. |
| has_results | Check which results a Z* object has. |
| has_results-method | Check which results a Z* object has. |
| jaccard | Calculate the Jaccard coefficient. |
| leaf_tags | Find all the leaf tags in a potentially nested list. The generic form of a list is tag = value; find all the tags in a list. |
| load_zproject | Load a Zonation project. |
| map_indexes | Map vector to actual column indexes. |
| names-method | Names of variants in Zproject |
| nfeatures | Get the number of feature included in a Zonation variant |
| nfeatures-method | Get the number of feature included in a Zonation variant |
| nvariants | Get the number of variants included in a Zonation project |
| nvariants-method | Get the number of variants included in a Zonation project |
| opendir | Open the directory of a Zproject using the system file browser. |
| opendir-method | Open the directory of a Zproject using the system file browser. |
| outdir | Get path to output directory. |
| outdir-method | Get path to output directory. |
| parse_bat | Parse the content of a Zonation batch (bat) file and make OS specific adjustments if needed. |
| performance | Get performance levels. |
| performance-method | Get performance levels. |
| plot-method | Plot Zonation performance curves for individual features. |
| plot-method | Plot Zonation performance curves for groups. |
| plot_hist | Create a ggplot2 histogram of a 'RasterLayer'. |
| ppa_lsm | Get ppa.lsm results data of a Z* object. |
| ppa_lsm-method | Get ppa.lsm results data of a Z* object. |
| print-method | Print Zvariant information. |
| rank_raster | Get Zonation result rank raster. |
| rank_raster-method | Get Zonation result rank raster. |
| rank_rasters | Get Zonation result rank rasters of a project. |
| rank_rasters-method | Get Zonation result rank rasters of a project. |
| read_bat | Read Zonation-specific (MS Windows) batch file. |
| read_curves | Read in performance curves produced by Zonation. |
| read_dat | Read a dat file (Windows-style ini-file) for configuration information. |
| read_features_info | Read a features info file. |
| read_groups | Read a groups file. |
| read_grp_curves | Read in performance curves for grouped features produced by Zonation. |
| read_ppa_lsm | Read Zonation post-processing analysis (ppa) result file. |
| read_result_rasters | Read Zonation-specific raster result files. |
| read_spp | Read Zonation variant specific spp-file. |
| regroup_curves | Re-calculate group curves data. |
| require_package | Requires a given package and if not present installs and loads it. |
| results | Getter method for results ('Zresults') in a class 'Zvariant' object. |
| results-method | Getter method for results ('Zresults') in a class 'Zvariant' object. |
| run_bat | Try to run a given batch (bat) files. |
| save_zvariant | Saves the current state of an instance of 'Zvariant-class' on the file system. 'Zvariant' object tracks the location of relevant files, but the root path can be changed. If it is not changed, then the current files can be overwritten. |
| save_zvariant-method | Saves the current state of an instance of 'Zvariant-class' on the file system. 'Zvariant' object tracks the location of relevant files, but the root path can be changed. If it is not changed, then the current files can be overwritten. |
| selection_coverage | Intersection of two coverages. |
| set_dat_param | Set a specified run setting parameter value |
| set_dat_param-method | Set a specified run setting parameter value |
| show-method | Print Zvariant information. |
| sppdata | Simple getter mehtod for spp data in a class 'Zvariant'object. |
| sppdata-method | Simple getter mehtod for spp data in a class 'Zvariant'object. |
| sppdata<- | Simple getter mehtod for spp data in a class 'Zvariant'object. |
| sppdata<--method | Simple getter mehtod for spp data in a class 'Zvariant'object. |
| sppweights | Get biodiversity feature weights of a Zonation variant |
| sppweights-method | Get biodiversity feature weights of a Zonation variant |
| sppweights<- | Get biodiversity feature weights of a Zonation variant |
| sppweights<--method | Get biodiversity feature weights of a Zonation variant |
| variants | Get all variants in a Zonation project |
| variants-method | Get all variants in a Zonation project |
| write_dat | Write a Zonation run configuration (dat) file. |
| ZCurvesDataFrame | The ZCurvesDataFrame class |
| ZCurvesDataFrame-class | The ZCurvesDataFrame class |
| ZGroupCurvesDataFrame | The ZGroupCurvesDataFrame class |
| ZGroupCurvesDataFrame-class | The ZGroupCurvesDataFrame class |
| zlegend | Get various Zonation legends |
| zparameters | Get all Zonation run configuration parameters. |
| Zproject | The Zproject class |
| Zproject-class | The Zproject class |
| Zresults | The Zresults class |
| Zresults-class | The Zresults class |
| Zvariant | The Zvariant class |
| Zvariant-class | The Zvariant class |