| add.summary | Summary statistics and plot methods for runjags class objects |
| as.jags | The runjags class and available S3 methods |
| as.jags.default | The runjags class and available S3 methods |
| as.jags.runjags | The runjags class and available S3 methods |
| as.mcmc.list.runjags | The runjags class and available S3 methods |
| as.mcmc.runjags | The runjags class and available S3 methods |
| as.runjags | The runjags class and available S3 methods |
| as.runjags.default | The runjags class and available S3 methods |
| as.runjags.jags | The runjags class and available S3 methods |
| ask | Obtain Input from User With Error Handling |
| autoextend.JAGS | Run or extend a user-specified Bayesian MCMC model in JAGS with automatically calculated run-length and convergence diagnostics |
| autoextend.jags | Run or extend a user-specified Bayesian MCMC model in JAGS with automatically calculated run-length and convergence diagnostics |
| autorun.JAGS | Run or extend a user-specified Bayesian MCMC model in JAGS with automatically calculated run-length and convergence diagnostics |
| autorun.jags | Run or extend a user-specified Bayesian MCMC model in JAGS with automatically calculated run-length and convergence diagnostics |
| cleanup.JAGS | The runjags class and available S3 methods |
| cleanup.jags | The runjags class and available S3 methods |
| combine.JAGS | Combining and dividing runjags and MCMC objects |
| combine.jags | Combining and dividing runjags and MCMC objects |
| combine.MCMC | Combining and dividing runjags and MCMC objects |
| combine.mcmc | Combining and dividing runjags and MCMC objects |
| contrasts.MCMC | Mutate functions to be used with runjags summary methods |
| contrasts.mcmc | Mutate functions to be used with runjags summary methods |
| dic.runjags | Extract peripheral information from runjags objects |
| divide.JAGS | Combining and dividing runjags and MCMC objects |
| divide.jags | Combining and dividing runjags and MCMC objects |
| drop.k | Drop-k and simulated dataset studies using JAGS |
| drop.k.JAGS | Drop-k and simulated dataset studies using JAGS |
| drop.k.jags | Drop-k and simulated dataset studies using JAGS |
| dump.format | Conversion Between a Named List and a Character String in the R Dump Format |
| dump.list.format | Conversion Between a Named List and a Character String in the R Dump Format |
| extend.JAGS | Run or extend a user-specified Bayesian MCMC model in JAGS from within R |
| extend.jags | Run or extend a user-specified Bayesian MCMC model in JAGS from within R |
| extract | Extract peripheral information from runjags objects |
| extract.jags | Extract peripheral information from runjags objects |
| extract.runjags | Extract peripheral information from runjags objects |
| failed.JAGS | The runjags class and available S3 methods |
| failed.jags | The runjags class and available S3 methods |
| failedjags | The runjags class and available S3 methods |
| findJAGS | Attempt to Locate a JAGS Install |
| findjags | Attempt to Locate a JAGS Install |
| fitted.runjags | The runjags class and available S3 methods |
| is.runjags | The runjags class and available S3 methods |
| list.format | Conversion Between a Named List and a Character String in the R Dump Format |
| load.runJAGSmodule | Load the internal JAGS module provided by runjags |
| load.runjagsmodule | Load the internal JAGS module provided by runjags |
| mutate.functions | Mutate functions to be used with runjags summary methods |
| new_unique | Create a Unique Filename |
| plot.runjags | Summary statistics and plot methods for runjags class objects |
| plot.runjagsplots | Summary statistics and plot methods for runjags class objects |
| plot.runjagsstudy | Print methods for runjags helper classes |
| prec2sd | Mutate functions to be used with runjags summary methods |
| predict.runjags | The runjags class and available S3 methods |
| print.crosscorrstats | Print methods for runjags helper classes |
| print.dicstats | Print methods for runjags helper classes |
| print.failedjags | Print methods for runjags helper classes |
| print.gelman.with.target | Print methods for runjags helper classes |
| print.gelmanwithtarget | Print methods for runjags helper classes |
| print.mcsestats | Print methods for runjags helper classes |
| print.rjagsoutput | Print methods for runjags helper classes |
| print.runjags | Summary statistics and plot methods for runjags class objects |
| print.runjagsbginfo | Print methods for runjags helper classes |
| print.runjagsdata | Print methods for runjags helper classes |
| print.runjagsinits | Print methods for runjags helper classes |
| print.runjagsmodel | Print methods for runjags helper classes |
| print.runjagsoutput | Print methods for runjags helper classes |
| print.runjagsplots | Summary statistics and plot methods for runjags class objects |
| print.runjagsstudy | Print methods for runjags helper classes |
| read.JAGSfile | Extract Any Models, Data, Monitored Variables or Initial Values As Character Vectors from a JAGS or WinBUGS Format Textfile |
| read.jagsfile | Extract Any Models, Data, Monitored Variables or Initial Values As Character Vectors from a JAGS or WinBUGS Format Textfile |
| read.WinBUGS | Extract Any Models, Data, Monitored Variables or Initial Values As Character Vectors from a JAGS or WinBUGS Format Textfile |
| read.winbugs | Extract Any Models, Data, Monitored Variables or Initial Values As Character Vectors from a JAGS or WinBUGS Format Textfile |
| residuals.runjags | The runjags class and available S3 methods |
| results.JAGS | Importing of saved JAGS simulations with partial error recovery |
| results.jags | Importing of saved JAGS simulations with partial error recovery |
| run.JAGS | Run or extend a user-specified Bayesian MCMC model in JAGS from within R |
| run.jags | Run or extend a user-specified Bayesian MCMC model in JAGS from within R |
| run.JAGS.study | Drop-k and simulated dataset studies using JAGS |
| run.jags.study | Drop-k and simulated dataset studies using JAGS |
| runjags-class | The runjags class and available S3 methods |
| runJAGS.getOption | Options for the runjags package |
| runjags.getOption | Options for the runjags package |
| runJAGS.options | Options for the runjags package |
| runjags.options | Options for the runjags package |
| runjags.printmethods | Print methods for runjags helper classes |
| runjagsclass | The runjags class and available S3 methods |
| runjagsstudy-class | The runjags class and available S3 methods |
| runjagsstudyclass | The runjags class and available S3 methods |
| summary.runjags | Summary statistics and plot methods for runjags class objects |
| summary.runjagsstudy | Print methods for runjags helper classes |
| template.JAGS | Generate a generalised linear mixed model (GLMM) specification in JAGS |
| template.jags | Generate a generalised linear mixed model (GLMM) specification in JAGS |
| template_huiwalter | Create a Hui-Walter model based on paired test data for an arbitrary number of tests and populations |
| testJAGS | Analyse the System to Check That JAGS Is Installed |
| testjags | Analyse the System to Check That JAGS Is Installed |
| timestring | Calculate the Elapsed Time in Sensible Units |
| unload.runJAGSmodule | Load the internal JAGS module provided by runjags |
| unload.runjagsmodule | Load the internal JAGS module provided by runjags |
| write.JAGSfile | Write a complete JAGS model to a text file |
| write.jagsfile | Write a complete JAGS model to a text file |