Interactive Annotation of Characters with Biological Ontologies
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Documentation for package ‘ontoFAST’ version 1.0.0
Help Pages
| annot_all_chars | Annotate all character statements with ontology terms |
| annot_char_grep | Annotate a character statement with ontology terms |
| chars_per_term | Get number of chracters per each ontology term |
| edges2list | Convert edge matrix to list |
| exclude_terms | Ontology terms to exclude for sunburst plot |
| export_annotations | Export annotation data |
| export_cytoscape | Export to Cytoscape format |
| get_ancestors_chars | Get ancestal ontology terms for a set of characters |
| get_descendants_chars | Get characters that descendants of selected ontology term |
| get_onto_id | Get IDs for ontology names |
| get_onto_name | Get names for ontology IDs |
| HAO | Hymenoptera Anatomy Ontology (HAO) |
| list2edges | Convert list to edge matrix |
| make_shiny_in | Make an ontology object for visualization |
| onto_process | Shortcut to process characters and ontology |
| paths_sunburst | Return ontology paths for characters |
| runOntoFast | Run ontoFAST interactively |
| Scarab | A modified Hymenoptera Anatomy Ontology (HAO) to accommodate anatomy of dung beetles |
| Sharkey_2011 | Hymenoptera character statements |
| Sharkey_2011_annot | Hymenoptera characters annotated with ontology terms |
| syn_extract | Link synonyms with ontology terms |
| table2list | Converts a table to list |
| Tarasov_2017_annot | Dung beetle characters annotated with ontology terms |