| bin | Bin values into increasingly wider bins |
| cellhealth | Cell Painting dataset of CRISPR perturbations. |
| cellhealthmetrics | Quality metrics for Cell Painting dataset of CRISPR perturbations. |
| cosine_sparse | Compute similarity between pairs of rows of a matrix |
| drop_annotation | Drop row annotations. |
| get_annotation | Get row annotations. |
| get_p_value | Compute p-value against null distribution |
| matric | matric: Metrics for Similarity Matrices |
| null_distribution | Compute null distribution for a set of metrics |
| null_distribution_helper | Compute null distribution of metrics |
| pearson_sparse | Compute similarity between pairs of rows of a matrix |
| preprocess_data | Preprocess data. 'preprocess_data' preprocesses data. |
| sim_annotate | Annotate a melted similarity matrix. |
| sim_calculate | Calculate a melted similarity matrix. |
| sim_calculate_ij | Calculate similarities given pairs of rows |
| sim_collate | Collate several subsets of a melted similarity matrix, required for computing metrics. |
| sim_filter_all_same | Filter a melted similarity matrix to keep pairs with the same values in specific columns. |
| sim_filter_all_same_keep_some | Filter a melted similarity matrix to keep pairs with the same values in specific columns, and keep only some of these pairs. |
| sim_filter_keep_or_drop_some | Filter a melted similarity matrix to remove or keep specified rows. |
| sim_filter_some_different_drop_some | Filter a melted similarity matrix to keep pairs with the same values in specific columns, and other constraints. |
| sim_metrics | Compute metrics. |
| sim_metrics_helper | Helper function to compute metrics. |
| sim_metrics_signif | Report p-values for metrics |
| sim_new | Constructor for 'matric_sim' S3 class. |
| sim_plot | Plot a melted similarity matrix. |
| sim_read | Read similarity matrix. |
| sim_restore | Restorer for 'matric_sim' S3 class. |
| sim_validate | Validator for 'matric_sim' S3 class. |
| sim_wider | Widen a symmetric melted similarity matrix. |
| sim_write | Write similarity matrix. |
| sparse_pairwise | Compute similarity between pairs of rows of a matrix |
| sparse_similarity | Compute similarity between pairs of rows of a matrix |
| tcrossprod_ij | Compute cross product between two sets of rows of a matrix. |