| seqalign |
Computation details about a pairwise alignment |
| seqcomp |
Compare two state sequences |
| seqconc |
Concatenate vectors of states or events into a character string |
| seqcost |
Generate substitution and indel costs |
| seqdecomp |
Convert a character string into a vector of states or events |
| seqdef |
Create a state sequence object |
| seqdHplot |
Plot state sequence objects |
| seqdiff |
Position-wise discrepancy analysis between groups of sequences |
| seqdim |
Dimension of a set of sequences |
| seqdist |
Distances (dissimilarities) between sequences |
| seqdistmc |
Multidomain sequences |
| seqdomassoc |
Measures of association between domains of sequence data |
| seqdplot |
Plot state sequence objects |
| seqdss |
Extract sequences of distinct successive states |
| seqdur |
Extract state durations from a sequence object. |
| seqeapplysub |
Checking for the presence of given event subsequences |
| seqecmpgroup |
Identifying discriminating subsequences |
| seqeconstraint |
Setting time constraints and the counting method |
| seqecontain |
Check if sequence contains events |
| seqecreate |
Create event sequence objects. |
| seqefsub |
Searching for frequent subsequences |
| seqeid |
Retrieve unique ids from an event sequence object. |
| seqelength |
Lengths of event sequences |
| seqelength<- |
Lengths of event sequences |
| seqetm |
Create a transition-definition matrix |
| seqeweight |
Setting or retrieving weights of an event sequence object. |
| seqeweight<- |
Setting or retrieving weights of an event sequence object. |
| seqfind |
Indexes of state sequence(s) x in state sequence object y |
| seqformat |
Conversion between sequence formats |
| seqfplot |
Plot state sequence objects |
| seqfpos |
Search for the first occurrence of a given element in a sequence |
| seqfposend |
End of first spell in given state |
| seqgen |
Random sequences generation |
| seqHtplot |
Plot state sequence objects |
| seqibad |
Badness index |
| seqici |
Complexity index of individual sequences |
| seqidegrad |
Degradation, Precarity, and Insecurity indexes |
| seqient |
Within sequence entropies |
| seqindic |
Sequence indicators |
| seqinsecurity |
Degradation, Precarity, and Insecurity indexes |
| seqintegr |
Integrative potential |
| seqintegration |
Integrative potential |
| seqIplot |
Plot state sequence objects |
| seqiplot |
Plot state sequence objects |
| seqipos |
Indicators for binary sequences of positive and negative states. |
| seqistatd |
State frequencies in each individual sequence |
| seqivardur |
Variance of spell durations in individual sequences |
| seqivolatility |
Volatility of individual state sequences |
| seqlegend |
Plot a legend for the states in a sequence object |
| seqlength |
Sequence length |
| seqlength.align |
Align sequence length across domains |
| seqLLCP |
Compute the length of the longest common prefix of two sequences |
| seqLLCS |
Compute the length of the longest common subsequence of two sequences |
| seqlogp |
Logarithm of the probabilities of state sequences |
| seqmaintokens |
Indexes of most frequent tokens |
| seqMD |
Multidomain sequences |
| seqmeant |
Mean durations in each state |
| seqmodst |
Sequence of modal states |
| seqmpos |
Number of matching positions between two sequences. |
| seqmsplot |
Plot state sequence objects |
| seqmtplot |
Plot state sequence objects |
| seqnum |
Transform into a sequence object with numerical alphabet. |
| seqpcfilter |
Parallel coordinate plot for sequence data |
| seqpcplot |
Parallel coordinate plot for sequence data |
| seqplot |
Plot state sequence objects |
| seqplotMD |
Plot multidomain state sequences |
| seqpm |
Find substring patterns in sequences |
| seqprecarity |
Degradation, Precarity, and Insecurity indexes |
| seqprecorr |
Degradation, Precarity, and Insecurity indexes |
| seqprecstart |
State precarity |
| seqrecode |
Recoding state sequence objects and factors |
| seqrep |
Extracting sets of representative sequences |
| seqrf |
Relative Frequency Groups. |
| seqrfplot |
Plot state sequence objects |
| seqrplot |
Plot state sequence objects |
| seqsep |
Adds separators to sequences stored as character string |
| seqST |
Sequences turbulence |
| seqstatd |
Sequence of transversal state distributions and their entropies |
| seqstatf |
State frequencies in the whole sequence data set |
| seqstatl |
List of distinct states or events (alphabet) in a sequence data set. |
| seqsubm |
Generate substitution and indel costs |
| seqsubsn |
Number of distinct subsequences in a sequence. |
| seqtab |
Frequency table of the sequences |
| seqtransn |
Number of transitions in a sequence |
| seqtrate |
Compute transition rates between states |
| seqtree |
Tree structured analysis of a state sequence object. |
| seqtree2dot |
Graphical representation of a dissimilarity tree |
| seqtreedisplay |
Graphical rendering of a sequence regression tree |
| stlab |
Get or set the state labels of a sequence object |
| stlab<- |
Get or set the state labels of a sequence object |
| summary.ddomassoc |
Domain association measures |
| summary.dissrf |
Relative Frequency Groups. |
| summary.seqrf |
Relative Frequency Groups. |
| summary.stslist |
Create a state sequence object |