| addVisualization | The 'Mercator' Distance Visualization Object |
| barplot-method | The 'Mercator' Distance Visualization Object |
| binaryDistance | Binary Distance Definitions Across Methods |
| BinaryMatrix | Class '"BinaryMatrix"' |
| BinaryMatrix-class | Class '"BinaryMatrix"' |
| CML1000 | CML Cytogenetic Data |
| CML500 | CML Cytogenetic Data |
| dim-method | The 'Mercator' Distance Visualization Object |
| dim-method | Class '"BinaryMatrix"' |
| downsample | Downsampling a Distance Visualization to Facilitate iGraph |
| fakeclin | CML Cytogenetic Data |
| fakedata | CML Cytogenetic Data |
| getClusters | The 'Mercator' Distance Visualization Object |
| goodmanKruskalDistance | Binary Distance Definitions Across Methods |
| goodmanKruskalSimilarity | Binary Distance Definitions Across Methods |
| hammingDistance | Binary Distance Definitions Across Methods |
| hist-method | The 'Mercator' Distance Visualization Object |
| hist-method | Class '"BinaryMatrix"' |
| jaccardDistance | Binary Distance Definitions Across Methods |
| jaccardSimilarity | Binary Distance Definitions Across Methods |
| lgfFeatures | CML Cytogenetic Data |
| Mercator | The 'Mercator' Distance Visualization Object |
| Mercator-class | The 'Mercator' Distance Visualization Object |
| mercator-data | CML Cytogenetic Data |
| pearsonDistance | Binary Distance Definitions Across Methods |
| pearsonSimilarity | Binary Distance Definitions Across Methods |
| plot-method | The 'Mercator' Distance Visualization Object |
| print-method | Class '"BinaryMatrix"' |
| recluster | Changing Cluster and Color Assignments in Mercator |
| recolor | Changing Cluster and Color Assignments in Mercator |
| remapColors | Changing Cluster and Color Assignments in Mercator |
| removeDuplicateFeatures | Remove Duplicate Features or Samples from a Binary Matrix Object |
| removeDuplicates | Remove Duplicate Features or Samples from a Binary Matrix Object |
| russellRaoSimilarity | Binary Distance Definitions Across Methods |
| russelRaoDistance | Binary Distance Definitions Across Methods |
| scatter-method | The 'Mercator' Distance Visualization Object |
| setClusters | Changing Cluster and Color Assignments in Mercator |
| show-method | Class '"BinaryMatrix"' |
| sokalMichenerDistance | Binary Distance Definitions Across Methods |
| sokalMichenerSimilarity | Binary Distance Definitions Across Methods |
| summary-method | The 'Mercator' Distance Visualization Object |
| summary-method | Class '"BinaryMatrix"' |
| t-method | Class '"BinaryMatrix"' |
| ThreshedBinaryMatrix | Threshing and Reaping the 'BinaryMatrix' |
| ThreshedBinaryMatrix-class | Threshing and Reaping the 'BinaryMatrix' |
| threshLGF | Threshing and Reaping the 'BinaryMatrix' |
| validBinaryMatrix | Class '"BinaryMatrix"' |
| [-method | The 'Mercator' Distance Visualization Object |
| [-method | Class '"BinaryMatrix"' |