Identifying Functional Polymorphisms

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Documentation for package ‘IFP’ version 0.2.4

• DESCRIPTION file.

Help Pages

allele.freq	Allele Frequency Computation from Genotype Data
allele.freq.G	Allele Frequency Computation from the sequencing data with a vcf type of the 1000 Genomes Project
apoe	Genetic data of APOE gene region
apoe7	Genetic data of APOE gene region
apoeG	Sequencing data of APOE gene region from the 1000 Genomes Project
drgegggne	causal models with all possible causal factors: G, G*G, G*E and E
drgegne	causal models with three possible causal factors: G, G*E and E
drgen	causal models with G*E
drgene	causal models with G*E and E
drggn	causal models with G*G
drgn	causal models with G
error.rates	Error Rates Estimation for Likelihood Ratio Tests Designed for Identifying Number of Functional Polymorphisms
geno.freq	Genotype Frequency Computation from the sequencing data with a vcf type of the 1000 Genomes Project
genoC	Sequencing data of APOE gene region from the 1000 Genomes Project
genoT	Sequencing data of APOE gene region from the 1000 Genomes Project
genotype	Conversion to Genotypes from Alleles using the sequencing data with a vcf type of the 1000 Genomes Project
hap.freq	Estimation of Haplotype Frequencies with Two SNPs
iter.mcmc	mcmc inference of causal models with all possible causal factors: G, G*G, G*E and E
lrt	Likelihood Ratio Tests for Identifying Number of Functional Polymorphisms
lrtG	Likelihood Ratio Tests for Identifying Disease Polymorphisms with Same Effects