| Corbi-package | Corbi - Collection of Rudimentary Bioinformatics Tools |
| best_subnets | The best subnetworks |
| column | Extract a column from a matrix |
| Corbi | Corbi - Collection of Rudimentary Bioinformatics Tools |
| extend_subnets | Extend subnetworks from smaller subnetworks |
| get_adjusted_deg_diff | Calculate adjusted degree differences for given network |
| get_diff_ratio_net | Construct differential expression ratio network |
| get_ratio_distribution | Calculate expression ratio distribution |
| get_ratio_distribution2 | Calculate expression ratio distribution |
| get_ratio_variance | Calculate expression ratio variances |
| get_shortest_distances | Calculate shortest distances of unweighted network |
| get_subnets | All subnetworks of limited size |
| kappa_score | Cohen's kappa score |
| make_DEG_data | Simulate differentially expressed gene data (Gaussian) |
| make_DEG_data2 | Simulate differentially expressed gene data (Negative binomial) |
| make_DEG_pattern | Simulate differentially expressed gene pattern |
| markrank | MarkRank |
| netDEG | netDEG: Differentially expressed gene identification method |
| netDEG_pvalue | Calculate netDEG p-values |
| net_align | Network alignment method based on conditional random fields |
| net_query | Network querying method based on conditional random fields |
| net_query_batch | Network querying method based on conditional random fields |
| nnzero | The number of non-zero values of a submatrix |
| pmultihyper | The Multivariate Hypergeometric Distribution |
| pmultinom | The Multinomial Distribution |
| p_combine | Calculate combined p-value |
| read_net | Read network information from text file |
| rmultihyper | The Multivariate Hypergeometric Distribution |
| simulate_dropout | Simulate dropout expression data |
| simulate_dropout2 | Simulate dropout expression data |
| simulate_sample_groups | Simulate sample groups from given samples with labels |
| submatrix | Extract a submatrix from a matrix |
| URG_getFactor | Calculate normalization factors for URG method |
| URG_normalize | Normalize using given factors |
| write_net | Write network information to text file |