| addBagPlot | Add bagplot to existing plot |
| checkForLegLoc | Find best place on plot for placing legend |
| convertPlotCoordPix | Convert points of plot to coordinates in pixels |
| cumFrqPlot | Cumulative (or sorted) frequency plot (takes columns of 'dat' as separate series) |
| foldChangeArrow | Add arrow for expected Fold-Change to VolcanoPlot or MA-plot |
| histW | Histogram (version by WR) |
| imageW | Display numeric content of matrix as image |
| legendHist | Add histogram to existing plot |
| MAplotW | MA-plot (differential intensity versus average intensity) |
| mouseOverHtmlFile | Create mouse-over interactive html-pages (with links) |
| partitionPlot | Make matrix for layout to partition plotting area |
| plotBy2Groups | Separate and plot data by 2 groups |
| plotLinReg | Plot linear regression and confidence interval of regression |
| plotPCAw | PCA plot with bag-plot to highlight groups |
| plotW2Leg | x-y plot with 2 legends |
| profileAsClu | Plot profile(s) according to CLustering |
| staggerdCountsPlot | Staggered Chart for Ploting Counts to Multiple Leveles of the Threshold used |
| vioplotW | Violin-plots version W |
| VolcanoPlotW | Volcano-Plot (Statistical Test Outcome versus Relative Change) |