'dplyr' Functionality for Matched Tree and Data Objects

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Documentation for package ‘treeplyr’ version 0.1.10

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anolis Anole data
detectAllCharacters Apply detectCharacterType over an entire matrix
detectCharacterType Function to detect whether a character is continuous or discrete
filter.grouped_treedata Function for filtering rows from an object of class 'treedata'
filter.treedata Function for filtering rows from an object of class 'treedata'
filterMatrix Filter a matrix, returning either all continuous or all discrete characters
forceFactor Function for checking whether a treedata object contains only factors and for forcing data columns into factor format
forceNames Force names for rows, columns, or both
forceNumeric Function for checking whether a treedata object contains only numeric columns and for forcing data columns into numeric format
getVector A function for returning a named vector from a data frame or matrix with row names
group_by.treedata Function for grouping an object of class 'treedata'
hasNames Row and column name check
make.treedata Function for making an object of class 'treedata'
mutate.grouped_treedata Function for mutating an object of class 'treedata'
mutate.treedata Function for mutating an object of class 'treedata'
paint_clades Add regimes to a treedata object
reorder Reorder a 'treedata' object
reorder.treedata Reorder a 'treedata' object
select.grouped_treedata Function for selecting columns from an object of class 'treedata'
select.treedata Function for selecting columns from an object of class 'treedata'
slice.treedata Choose rows by their ordinal position in the tbl for an object of class 'treedata'
summarise.grouped_treedata Function for summarizing an object of class 'treedata'
summarise.treedata Function for summarizing an object of class 'treedata'
summarize.grouped_treedata Function for summarizing an object of class 'treedata'
summarize.treedata Function for summarizing an object of class 'treedata'
tdapply Apply a function over all treedata object columns and return a list of results, analogously to the normal apply function
treedply Run a function on a 'treedata' object
treedply.treedata Run a function on a 'treedata' object
treeply Run a function on the phylogeny of a 'treedata' object
treeply.treedata Run a function on the phylogeny of a 'treedata' object
treeplyr treeplyr: 'dplyr' Functionality for Matched Tree and Data Objects
treeplyr-defunct Defunct functions in treeplyr
ungroup.grouped_treedata Function for grouping an object of class 'treedata'