| .CompositionIndex | Diversity Index |
| .DiversityIndex | Diversity Index |
| .EvennessIndex | Diversity Index |
| .HeterogeneityIndex | Diversity Index |
| .PermutationOrder | Permutation Order |
| .RefineCA | Partial Bootstrap CA |
| .RichnessIndex | Diversity Index |
| Bertin | Bar Plot |
| bootstrap_evenness | Heterogeneity and Evenness |
| bootstrap_evenness-method | Heterogeneity and Evenness |
| bootstrap_heterogeneity | Heterogeneity and Evenness |
| bootstrap_heterogeneity-method | Heterogeneity and Evenness |
| bootstrap_richness | Richness and Rarefaction |
| bootstrap_richness-method | Richness and Rarefaction |
| CompositionIndex-class | Diversity Index |
| DiversityIndex | Diversity Index |
| DiversityIndex-class | Diversity Index |
| eppm | Independance |
| eppm-method | Independance |
| EvennessIndex-class | Diversity Index |
| Ford | Bar Plot |
| get | Get or Set Parts of an Object |
| get_index | Get or Set Parts of an Object |
| get_index-method | Get or Set Parts of an Object |
| get_method | Get or Set Parts of an Object |
| get_method-method | Get or Set Parts of an Object |
| get_order | Get or Set Parts of an Object |
| get_order-method | Get or Set Parts of an Object |
| get_order-method | Matrix Seriation |
| heterogeneity-index | Heterogeneity and Evenness |
| HeterogeneityIndex-class | Diversity Index |
| independance | Independance |
| index_composition | Richness and Rarefaction |
| index_composition-method | Richness and Rarefaction |
| index_evenness | Heterogeneity and Evenness |
| index_evenness-method | Heterogeneity and Evenness |
| index_heterogeneity | Heterogeneity and Evenness |
| index_heterogeneity-method | Heterogeneity and Evenness |
| index_richness | Richness and Rarefaction |
| index_richness-method | Richness and Rarefaction |
| jackknife_evenness | Heterogeneity and Evenness |
| jackknife_evenness-method | Heterogeneity and Evenness |
| jackknife_heterogeneity | Heterogeneity and Evenness |
| jackknife_heterogeneity-method | Heterogeneity and Evenness |
| jackknife_richness | Richness and Rarefaction |
| jackknife_richness-method | Richness and Rarefaction |
| matrigraphe | Heatmap |
| mutator | Get or Set Parts of an Object |
| PermutationOrder-class | Permutation Order |
| permute | Matrix Seriation |
| permute-method | Matrix Seriation |
| plot-method | Diversity Plot |
| plot_bar | Bar Plot |
| plot_bertin | Bar Plot |
| plot_bertin-method | Bar Plot |
| plot_diversity | Diversity Plot |
| plot_ford | Bar Plot |
| plot_ford-method | Bar Plot |
| plot_heatmap | Heatmap |
| plot_heatmap-method | Heatmap |
| plot_line | Line Plot |
| plot_matrix | Heatmap |
| plot_rank | Line Plot |
| plot_rank-method | Line Plot |
| plot_spot | Spot Plot |
| plot_spot-method | Spot Plot |
| pvi | Independance |
| pvi-method | Independance |
| rarefaction | Richness and Rarefaction |
| rarefaction-method | Richness and Rarefaction |
| RefineCA-class | Partial Bootstrap CA |
| refine_seriation | Matrix Seriation |
| refine_seriation-method | Matrix Seriation |
| richness-index | Richness and Rarefaction |
| RichnessIndex-class | Diversity Index |
| seriate_average | Matrix Seriation |
| seriate_average-method | Matrix Seriation |
| seriate_rank | Matrix Seriation |
| seriate_rank-method | Matrix Seriation |
| seriation | Matrix Seriation |
| seriographe | Bar Plot |
| set | Get or Set Parts of an Object |
| similarity | Similarity |
| similarity-method | Similarity |
| simulate_evenness | Heterogeneity and Evenness |
| simulate_evenness-method | Heterogeneity and Evenness |
| simulate_heterogeneity | Heterogeneity and Evenness |
| simulate_heterogeneity-method | Heterogeneity and Evenness |
| simulate_richness | Richness and Rarefaction |
| simulate_richness-method | Richness and Rarefaction |
| subset | Extract or Replace Parts of an Object |
| test_diversity | Diversity Test |
| test_diversity-method | Diversity Test |
| turnover | Turnover |
| turnover-index | Turnover |
| turnover-method | Turnover |
| [[-method | Extract or Replace Parts of an Object |