Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

Documentation for package ‘ouch’ version 2.17

ouch-package	Ornstein-Uhlenbeck methods for comparative phylogenetic hypotheses
anolis.ssd	Greater Antillean anolis lizard sexual size dimorphism data
ape2ouch	Phylogenetic tree object in 'ouch' format
bimac	Anolis bimaculatus lizard size data
bootstrap	Bootstrapping for uncertainty quantification
bootstrap-method	Bootstrapping for uncertainty quantification
brown	Phylogenetic Brownian motion models
browntree-class	Phylogenetic Brownian motion models
coef	Model coefficients
coef-method	Model coefficients
hansen	Ornstein-Uhlenbeck models of trait evolution
hansentree-class	Ornstein-Uhlenbeck models of trait evolution
logLik	Log likelihood of a fitted model
logLik-method	Log likelihood of a fitted model
ouch	Ornstein-Uhlenbeck methods for comparative phylogenetic hypotheses
ouchtree	Phylogenetic tree object in 'ouch' format
ouchtree-class	Phylogenetic tree object in 'ouch' format
paint	Painting regimes on a phylogenetic tree
plot	'ouch' plotting functions
plot-method	'ouch' plotting functions
simulate	Simulations of a phylogenetic trait model
simulate-method	Simulations of a phylogenetic trait model
summary	'ouch' summary methods
summary-method	'ouch' summary methods
update	Update and refit an 'ouch' model
update-method	Update and refit an 'ouch' model