Rigorous - 'NIfTI' + 'ANALYZE' + 'AFNI' : Input / Output

Documentation for package ‘oro.nifti’ version 0.11.0

DESCRIPTION file.
Code demos. Use demo() to run them.

Help Pages

A B C D E F G H I M N O P Q R S T U V W X Z misc

-- A --

afni-class	Class "afni"
anlz	Constructor for Analyze
anlz-class	Class "anlz"
anlz-nifti-ops	Operations for Objects in the ANALYZE and NIfTI classes
as-method	Force an Object to Belong to the ANALYZE or NIfTI Class
as.anlz	as.anlz
as.nifti	as.nifti
as<--method	Force an Object to Belong to the ANALYZE or NIfTI Class
Audit Trails	Facilitate the Creation and Modification of Audit Trails
audit.trail	Extract or Replace NIfTI Audit Trail
audit.trail-method	Extract or Replace NIfTI Audit Trail
audit.trail-methods	Extract or Replace NIfTI Audit Trail
audit.trail<-	Extract or Replace NIfTI Audit Trail
audit.trail<--method	Extract or Replace NIfTI Audit Trail
aux.file	Extract Image Attribute 'aux_file'
aux.file-method	Extract Image Attribute 'aux_file'
aux.file<-	Extract Image Attribute 'aux_file'
aux.file<--method	Extract Image Attribute 'aux_file'
aux_file	Extract Image Attribute 'aux_file'
aux_file-method	Extract Image Attribute 'aux_file'
aux_file-methods	Extract Image Attribute 'aux_file'
aux_file-methods,	Extract Image Attribute 'aux_file'
aux_file<-	Extract Image Attribute 'aux_file'
aux_file<--method	Extract Image Attribute 'aux_file'

-- B --

bitpix	Extract Image Attribute 'bitpix'
bitpix-method	Extract Image Attribute 'bitpix'
bitpix-methods	Extract Image Attribute 'bitpix'
bitpix-methods,	Extract Image Attribute 'bitpix'
bitpix<-	Extract Image Attribute 'bitpix'
bitpix<--method	Extract Image Attribute 'bitpix'
blend	Merge Two NIfTI or ANALYZE Volumes
blend,anlz,anlz-methods	Merge Two NIfTI or ANALYZE Volumes
blend,anlz,nifti-methods	Merge Two NIfTI or ANALYZE Volumes
blend,nifti,anlz-methods	Merge Two NIfTI or ANALYZE Volumes
blend,nifti,nifti-methods	Merge Two NIfTI or ANALYZE Volumes
blend-method	Merge Two NIfTI or ANALYZE Volumes
blendVolumes	Merge Two NIfTI or ANALYZE Volumes

-- C --

cal.max	Extract Image Attribute 'cal_max'
cal.max-method	Extract Image Attribute 'cal_max'
cal.max<-	Extract Image Attribute 'cal_max'
cal.max<--method	Extract Image Attribute 'cal_max'
cal.min	Extract Image Attribute 'cal_min'
cal.min-method	Extract Image Attribute 'cal_min'
cal.min<-	Extract Image Attribute 'cal_min'
cal.min<--method	Extract Image Attribute 'cal_min'
cal.units	Extract Image Attribute 'cal_units'
cal.units-method	Extract Image Attribute 'cal_units'
cal.units<-	Extract Image Attribute 'cal_units'
cal.units<--method	Extract Image Attribute 'cal_units'
calibrateImage	Set Minimum/Maximum Values for NIfTI data
cal_img	Set Minimum/Maximum Values for NIfTI data
cal_max	Extract Image Attribute 'cal_max'
cal_max-method	Extract Image Attribute 'cal_max'
cal_max-methods	Extract Image Attribute 'cal_max'
cal_max-methods,	Extract Image Attribute 'cal_max'
cal_max<-	Extract Image Attribute 'cal_max'
cal_max<--method	Extract Image Attribute 'cal_max'
cal_min	Extract Image Attribute 'cal_min'
cal_min-method	Extract Image Attribute 'cal_min'
cal_min-methods	Extract Image Attribute 'cal_min'
cal_min-methods,	Extract Image Attribute 'cal_min'
cal_min<-	Extract Image Attribute 'cal_min'
cal_min<--method	Extract Image Attribute 'cal_min'
cal_units	Extract Image Attribute 'cal_units'
cal_units-method	Extract Image Attribute 'cal_units'
cal_units-methods	Extract Image Attribute 'cal_units'
cal_units-methods,	Extract Image Attribute 'cal_units'
cal_units<-	Extract Image Attribute 'cal_units'
cal_units<--method	Extract Image Attribute 'cal_units'
coerce-method	Force an Object to Belong to the ANALYZE or NIfTI Class
coerce-methods	Force an Object to Belong to the ANALYZE or NIfTI Class
coerce<--method	Force an Object to Belong to the ANALYZE or NIfTI Class
compressed	Extract Image Attribute 'compressed'
compressed-method	Extract Image Attribute 'compressed'
compressed-methods	Extract Image Attribute 'compressed'
compressed-methods,	Extract Image Attribute 'compressed'
compressed<-	Extract Image Attribute 'compressed'
compressed<--method	Extract Image Attribute 'compressed'
Convert ANALYZE Codes	Convert ANALYZE Codes
Convert NIfTI Codes	Convert NIfTI Codes
convert.bitpix	Convert NIfTI Codes
convert.bitpix.anlz	Convert ANALYZE Codes
convert.datatype	Convert NIfTI Codes
convert.datatype.anlz	Convert ANALYZE Codes
convert.form	Convert NIfTI Codes
convert.intent	Convert NIfTI Codes
convert.orient.anlz	Convert ANALYZE Codes
convert.scene	Convert AFNI data codes
convert.slice	Convert NIfTI Codes
convert.units	Convert NIfTI Codes

-- D --

data.type	Extract Image Attribute 'data_type'
data.type-method	Extract Image Attribute 'data_type'
data.type<-	Extract Image Attribute 'data_type'
data.type<--method	Extract Image Attribute 'data_type'
datatype	Extract Image Attribute 'datatype'
datatype-method	Extract Image Attribute 'data_type'
datatype-method	Extract Image Attribute 'datatype'
datatype-methods	Extract Image Attribute 'datatype'
datatype-methods,	Extract Image Attribute 'datatype'
datatype<-	Extract Image Attribute 'datatype'
datatype<--method	Extract Image Attribute 'datatype'
data_type	Extract Image Attribute 'data_type'
data_type-method	Extract Image Attribute 'data_type'
data_type-methods	Extract Image Attribute 'data_type'
data_type-methods,	Extract Image Attribute 'data_type'
data_type<-	Extract Image Attribute 'data_type'
data_type<--method	Extract Image Attribute 'data_type'
db.name	Extract Image Attribute 'db_name'
db.name-method	Extract Image Attribute 'db_name'
db.name<-	Extract Image Attribute 'db_name'
db.name<--method	Extract Image Attribute 'db_name'
db_name	Extract Image Attribute 'db_name'
db_name-method	Extract Image Attribute 'db_name'
db_name-methods	Extract Image Attribute 'db_name'
db_name-methods,	Extract Image Attribute 'db_name'
db_name<-	Extract Image Attribute 'db_name'
db_name<--method	Extract Image Attribute 'db_name'
descrip	Extract Image Attribute 'descrip'
descrip-method	Extract Image Attribute 'descrip'
descrip-methods	Extract Image Attribute 'descrip'
descrip-methods,	Extract Image Attribute 'descrip'
descrip<-	Extract Image Attribute 'descrip'
descrip<--method	Extract Image Attribute 'descrip'
dim2freq	Bitwise Conversion Subroutines
dim2phase	Bitwise Conversion Subroutines
dim2slice	Bitwise Conversion Subroutines
dim_	Extract Image Attribute 'dim_'
dim_-method	Extract Image Attribute 'dim_'
dim_-methods	Extract Image Attribute 'dim_'
dim_-methods,	Extract Image Attribute 'dim_'
dim_<-	Extract Image Attribute 'dim_'
dim_<--method	Extract Image Attribute 'dim_'
dim_info	Extract Image Attribute 'dim_info'
dim_info-method	Extract Image Attribute 'dim_info'
dim_info-methods	Extract Image Attribute 'dim_info'
dim_info-methods,	Extract Image Attribute 'dim_info'
dim_info<-	Extract Image Attribute 'dim_info'
dim_info<--method	Extract Image Attribute 'dim_info'
dim_un0	Extract Image Attribute 'dim_un0'
dim_un0-method	Extract Image Attribute 'dim_un0'
dim_un0-methods	Extract Image Attribute 'dim_un0'
dim_un0-methods,	Extract Image Attribute 'dim_un0'
dim_un0<-	Extract Image Attribute 'dim_un0'
dim_un0<--method	Extract Image Attribute 'dim_un0'
dropImageDimension	Drop Image Dimension
drop_img_dim	Drop Image Dimension

-- E --

enableAuditTrail	Facilitate the Creation and Modification of Audit Trails
exp_date	Extract Image Attribute 'exp_date'
exp_date-method	Extract Image Attribute 'exp_date'
exp_date-methods	Extract Image Attribute 'exp_date'
exp_date-methods,	Extract Image Attribute 'exp_date'
exp_date<-	Extract Image Attribute 'exp_date'
exp_date<--method	Extract Image Attribute 'exp_date'
exp_time	Extract Image Attribute 'exp_time'
exp_time-method	Extract Image Attribute 'exp_time'
exp_time-methods	Extract Image Attribute 'exp_time'
exp_time-methods,	Extract Image Attribute 'exp_time'
exp_time<-	Extract Image Attribute 'exp_time'
exp_time<--method	Extract Image Attribute 'exp_time'
extender	Extract Image Attribute 'extender'
extender-method	Extract Image Attribute 'extender'
extender-methods	Extract Image Attribute 'extender'
extender-methods,	Extract Image Attribute 'extender'
extender<-	Extract Image Attribute 'extender'
extender<--method	Extract Image Attribute 'extender'
extents	Extract Image Attribute 'extents'
extents-method	Extract Image Attribute 'extents'
extents-methods	Extract Image Attribute 'extents'
extents-methods,	Extract Image Attribute 'extents'
extents<-	Extract Image Attribute 'extents'
extents<--method	Extract Image Attribute 'extents'

-- F --

field.skip	Extract Image Attribute 'field_skip'
field.skip-method	Extract Image Attribute 'field_skip'
field.skip<-	Extract Image Attribute 'field_skip'
field.skip<--method	Extract Image Attribute 'field_skip'
field_skip	Extract Image Attribute 'field_skip'
field_skip-method	Extract Image Attribute 'field_skip'
field_skip-methods	Extract Image Attribute 'field_skip'
field_skip-methods,	Extract Image Attribute 'field_skip'
field_skip<-	Extract Image Attribute 'field_skip'
field_skip<--method	Extract Image Attribute 'field_skip'
funused1	Extract Image Attribute 'funused1'
funused1-method	Extract Image Attribute 'funused1'
funused1-methods	Extract Image Attribute 'funused1'
funused1-methods,	Extract Image Attribute 'funused1'
funused1<-	Extract Image Attribute 'funused1'
funused1<--method	Extract Image Attribute 'funused1'
funused2	Extract Image Attribute 'funused2'
funused2-method	Extract Image Attribute 'funused2'
funused2-methods	Extract Image Attribute 'funused2'
funused2-methods,	Extract Image Attribute 'funused2'
funused2<-	Extract Image Attribute 'funused2'
funused2<--method	Extract Image Attribute 'funused2'
funused3	Extract Image Attribute 'funused3'
funused3-method	Extract Image Attribute 'funused3'
funused3-methods	Extract Image Attribute 'funused3'
funused3-methods,	Extract Image Attribute 'funused3'
funused3<-	Extract Image Attribute 'funused3'
funused3<--method	Extract Image Attribute 'funused3'

-- G --

generated	Extract Image Attribute 'generated'
generated-method	Extract Image Attribute 'generated'
generated-methods	Extract Image Attribute 'generated'
generated-methods,	Extract Image Attribute 'generated'
generated<-	Extract Image Attribute 'generated'
generated<--method	Extract Image Attribute 'generated'
getLastCallWithName	Facilitate the Creation and Modification of Audit Trails
glmax	Extract Image Attribute 'glmax'
glmax-method	Extract Image Attribute 'glmax'
glmax-methods	Extract Image Attribute 'glmax'
glmax-methods,	Extract Image Attribute 'glmax'
glmax<-	Extract Image Attribute 'glmax'
glmax<--method	Extract Image Attribute 'glmax'
glmin	Extract Image Attribute 'glmin'
glmin-method	Extract Image Attribute 'glmin'
glmin-methods	Extract Image Attribute 'glmin'
glmin-methods,	Extract Image Attribute 'glmin'
glmin<-	Extract Image Attribute 'glmin'
glmin<--method	Extract Image Attribute 'glmin'

-- H --

hist_un0	Extract Image Attribute 'hist_un0'
hist_un0-method	Extract Image Attribute 'hist_un0'
hist_un0-methods	Extract Image Attribute 'hist_un0'
hist_un0-methods,	Extract Image Attribute 'hist_un0'
hist_un0<-	Extract Image Attribute 'hist_un0'
hist_un0<--method	Extract Image Attribute 'hist_un0'
hkey.un0	Extract Image Attribute 'hkey_un0'
hkey.un0-method	Extract Image Attribute 'hkey_un0'
hkey.un0<-	Extract Image Attribute 'hkey_un0'
hkey.un0<--method	Extract Image Attribute 'hkey_un0'
hkey_un0	Extract Image Attribute 'hkey_un0'
hkey_un0-method	Extract Image Attribute 'hkey_un0'
hkey_un0-methods	Extract Image Attribute 'hkey_un0'
hkey_un0-methods,	Extract Image Attribute 'hkey_un0'
hkey_un0<-	Extract Image Attribute 'hkey_un0'
hkey_un0<--method	Extract Image Attribute 'hkey_un0'
hotmetal	Hot Metal Color Table

-- I --

image-method	Methods for Function 'image'
image-methods	Methods for Function 'image'
image.nifti	Methods for Function 'image'
img_data	Extract Image Attribute '.Data'
img_data-method	Extract Image Attribute '.Data'
img_data-methods	Extract Image Attribute '.Data'
img_data-methods,	Extract Image Attribute '.Data'
img_data<-	Extract Image Attribute '.Data'
img_data<--method	Extract Image Attribute '.Data'
img_length	Gets Image Length in Each Dimension
integerTranslation	integerTranslation
intent.code	Extract Image Attribute 'intent_code'
intent.code-method	Extract Image Attribute 'intent_code'
intent.code<-	Extract Image Attribute 'intent_code'
intent.code<--method	Extract Image Attribute 'intent_code'
intent.name	Extract Image Attribute 'intent_name'
intent.name-method	Extract Image Attribute 'intent_name'
intent.name<-	Extract Image Attribute 'intent_name'
intent.name<--method	Extract Image Attribute 'intent_name'
intent.p1	Extract Image Attribute 'intent_p1'
intent.p1-method	Extract Image Attribute 'intent_p1'
intent.p1<-	Extract Image Attribute 'intent_p1'
intent.p1<--method	Extract Image Attribute 'intent_p1'
intent.p2	Extract Image Attribute 'intent_p2'
intent.p2-method	Extract Image Attribute 'intent_p2'
intent.p2<-	Extract Image Attribute 'intent_p2'
intent.p2<--method	Extract Image Attribute 'intent_p2'
intent.p3	Extract Image Attribute 'intent_p3'
intent.p3-method	Extract Image Attribute 'intent_p3'
intent.p3<-	Extract Image Attribute 'intent_p3'
intent.p3<--method	Extract Image Attribute 'intent_p3'
intent_code	Extract Image Attribute 'intent_code'
intent_code-method	Extract Image Attribute 'intent_code'
intent_code-methods	Extract Image Attribute 'intent_code'
intent_code-methods,	Extract Image Attribute 'intent_code'
intent_code<-	Extract Image Attribute 'intent_code'
intent_code<--method	Extract Image Attribute 'intent_code'
intent_name	Extract Image Attribute 'intent_name'
intent_name-method	Extract Image Attribute 'intent_name'
intent_name-methods	Extract Image Attribute 'intent_name'
intent_name-methods,	Extract Image Attribute 'intent_name'
intent_name<-	Extract Image Attribute 'intent_name'
intent_name<--method	Extract Image Attribute 'intent_name'
intent_p1	Extract Image Attribute 'intent_p1'
intent_p1-method	Extract Image Attribute 'intent_p1'
intent_p1-methods	Extract Image Attribute 'intent_p1'
intent_p1-methods,	Extract Image Attribute 'intent_p1'
intent_p1<-	Extract Image Attribute 'intent_p1'
intent_p1<--method	Extract Image Attribute 'intent_p1'
intent_p2	Extract Image Attribute 'intent_p2'
intent_p2-method	Extract Image Attribute 'intent_p2'
intent_p2-methods	Extract Image Attribute 'intent_p2'
intent_p2-methods,	Extract Image Attribute 'intent_p2'
intent_p2<-	Extract Image Attribute 'intent_p2'
intent_p2<--method	Extract Image Attribute 'intent_p2'
intent_p3	Extract Image Attribute 'intent_p3'
intent_p3-method	Extract Image Attribute 'intent_p3'
intent_p3-methods	Extract Image Attribute 'intent_p3'
intent_p3-methods,	Extract Image Attribute 'intent_p3'
intent_p3<-	Extract Image Attribute 'intent_p3'
intent_p3<--method	Extract Image Attribute 'intent_p3'
internalImage	"internalImage" class
internalImage-class	"internalImage" class
inverseReorient	Reorient Image using NIfTI header
invertIntegerTranslation	integerTranslation
is.afni	check object
is.anlz	check object
is.nifti	check object
is.niftiExtension	check object

-- M --

magic	Extract Image Attribute 'magic'
magic-method	Extract Image Attribute 'magic'
magic-methods	Extract Image Attribute 'magic'
magic-methods,	Extract Image Attribute 'magic'
magic<-	Extract Image Attribute 'magic'
magic<--method	Extract Image Attribute 'magic'

-- N --

newAuditTrail	Facilitate the Creation and Modification of Audit Trails
nifti	Constructor for NIfTI
nifti-class	Class "nifti"
nifti-operators	Operations for NIfTI Objects
niftiAuditTrail-class	Class "niftiAuditTrail"
niftiAuditTrailCreated	Facilitate the Creation and Modification of Audit Trails
niftiAuditTrailEvent	Facilitate the Creation and Modification of Audit Trails
niftiAuditTrailSystemNode	Facilitate the Creation and Modification of Audit Trails
niftiAuditTrailSystemNodeEvent	Facilitate the Creation and Modification of Audit Trails
niftiAuditTrailToExtension	Facilitate the Creation and Modification of Audit Trails
niftiExtension-class	Class "niftiExtension"
niftiExtensionSection-class	Class "niftiExtensionSection"
niftiExtensionToAuditTrail	Facilitate the Creation and Modification of Audit Trails
niftiImage	"niftiImage" class
niftiImage-class	"niftiImage" class
nifti_assign-methods	Methods for Function [<- in Package 'base'
nifti_header	readNIfTI
nii2oro	Convert RNifti niftiImage to oro.nifti nifti object
NSLI	Dimension Accessor Functions
nsli	Dimension Accessor Functions
NTIM	Dimension Accessor Functions
ntim	Dimension Accessor Functions

-- O --

omax	Extract Image Attribute 'omax'
omax-method	Extract Image Attribute 'omax'
omax-methods	Extract Image Attribute 'omax'
omax-methods,	Extract Image Attribute 'omax'
omax<-	Extract Image Attribute 'omax'
omax<--method	Extract Image Attribute 'omax'
omin	Extract Image Attribute 'omin'
omin-method	Extract Image Attribute 'omin'
omin-methods	Extract Image Attribute 'omin'
omin-methods,	Extract Image Attribute 'omin'
omin<-	Extract Image Attribute 'omin'
omin<--method	Extract Image Attribute 'omin'
onefile	Creates the 'onefile' Specification for NIfTI
Ops-method	Operations for Objects in the ANALYZE and NIfTI classes
Ops-method	Operations for NIfTI Objects
orient	Extract Image Attribute 'orient'
orient-method	Extract Image Attribute 'orient'
orient-methods	Extract Image Attribute 'orient'
orient-methods,	Extract Image Attribute 'orient'
orient<-	Extract Image Attribute 'orient'
orient<--method	Extract Image Attribute 'orient'
orientation-methods	Extract NIfTI 3D Image Orientation
origin	Extract Image Attribute 'origin'
origin-method	Extract Image Attribute 'origin'
origin-methods	Extract Image Attribute 'origin'
origin-methods,	Extract Image Attribute 'origin'
origin<-	Extract Image Attribute 'origin'
origin<--method	Extract Image Attribute 'origin'
oro.nifti.info	Facilitate the Creation and Modification of Audit Trails
oro2nii	Convert oro.nifti nifti to RNifti niftiImage object
orthographic	Methods for Function 'orthographic' in Package 'dcemriS4'
orthographic-method	Methods for Function 'orthographic' in Package 'dcemriS4'
orthographic-methods	Methods for Function 'orthographic' in Package 'dcemriS4'
orthographic.nifti	Methods for Function 'orthographic' in Package 'dcemriS4'
overlay	Methods for Function overlay
overlay-method	Methods for Function overlay
overlay-methods	Methods for Function overlay
overlay.nifti	Methods for Function overlay

-- P --

patient.id	Extract Image Attribute 'patient_id'
patient.id-method	Extract Image Attribute 'patient_id'
patient.id<-	Extract Image Attribute 'patient_id'
patient.id<--method	Extract Image Attribute 'patient_id'
patient_id	Extract Image Attribute 'patient_id'
patient_id-method	Extract Image Attribute 'patient_id'
patient_id-methods	Extract Image Attribute 'patient_id'
patient_id-methods,	Extract Image Attribute 'patient_id'
patient_id<-	Extract Image Attribute 'patient_id'
patient_id<--method	Extract Image Attribute 'patient_id'
performPermutation	Transform array with orthogonal permutation matrix
pixdim	Extract Image Attribute 'pixdim'
pixdim-method	Extract Image Attribute 'pixdim'
pixdim-methods	Extract Image Attribute 'pixdim'
pixdim-methods,	Extract Image Attribute 'pixdim'
pixdim<-	Extract Image Attribute 'pixdim'
pixdim<--method	Extract Image Attribute 'pixdim'

-- Q --

qform	Extract NIfTI 3D Image Orientation
qform-method	Extract NIfTI 3D Image Orientation
qform-methods	Extract NIfTI 3D Image Orientation
qform.code	Extract Image Attribute 'qform_code'
qform.code-method	Extract Image Attribute 'qform_code'
qform.code<-	Extract Image Attribute 'qform_code'
qform.code<--method	Extract Image Attribute 'qform_code'
qform_code	Extract Image Attribute 'qform_code'
qform_code-method	Extract Image Attribute 'qform_code'
qform_code-methods	Extract Image Attribute 'qform_code'
qform_code-methods,	Extract Image Attribute 'qform_code'
qform_code<-	Extract Image Attribute 'qform_code'
qform_code<--method	Extract Image Attribute 'qform_code'
qoffset.x	Extract Image Attribute 'qoffset_x'
qoffset.x-method	Extract Image Attribute 'qoffset_x'
qoffset.x<-	Extract Image Attribute 'qoffset_x'
qoffset.x<--method	Extract Image Attribute 'qoffset_x'
qoffset.y	Extract Image Attribute 'qoffset_y'
qoffset.y-method	Extract Image Attribute 'qoffset_y'
qoffset.y<-	Extract Image Attribute 'qoffset_y'
qoffset.y<--method	Extract Image Attribute 'qoffset_y'
qoffset.z	Extract Image Attribute 'qoffset_z'
qoffset.z-method	Extract Image Attribute 'qoffset_z'
qoffset.z<-	Extract Image Attribute 'qoffset_z'
qoffset.z<--method	Extract Image Attribute 'qoffset_z'
qoffset_x	Extract Image Attribute 'qoffset_x'
qoffset_x-method	Extract Image Attribute 'qoffset_x'
qoffset_x-methods	Extract Image Attribute 'qoffset_x'
qoffset_x-methods,	Extract Image Attribute 'qoffset_x'
qoffset_x<-	Extract Image Attribute 'qoffset_x'
qoffset_x<--method	Extract Image Attribute 'qoffset_x'
qoffset_y	Extract Image Attribute 'qoffset_y'
qoffset_y-method	Extract Image Attribute 'qoffset_y'
qoffset_y-methods	Extract Image Attribute 'qoffset_y'
qoffset_y-methods,	Extract Image Attribute 'qoffset_y'
qoffset_y<-	Extract Image Attribute 'qoffset_y'
qoffset_y<--method	Extract Image Attribute 'qoffset_y'
qoffset_z	Extract Image Attribute 'qoffset_z'
qoffset_z-method	Extract Image Attribute 'qoffset_z'
qoffset_z-methods	Extract Image Attribute 'qoffset_z'
qoffset_z-methods,	Extract Image Attribute 'qoffset_z'
qoffset_z<-	Extract Image Attribute 'qoffset_z'
qoffset_z<--method	Extract Image Attribute 'qoffset_z'
quatern.b	Extract Image Attribute 'quatern_b'
quatern.b-method	Extract Image Attribute 'quatern_b'
quatern.b<-	Extract Image Attribute 'quatern_b'
quatern.b<--method	Extract Image Attribute 'quatern_b'
quatern.c	Extract Image Attribute 'quatern_c'
quatern.c-method	Extract Image Attribute 'quatern_c'
quatern.c<-	Extract Image Attribute 'quatern_c'
quatern.c<--method	Extract Image Attribute 'quatern_c'
quatern.d	Extract Image Attribute 'quatern_d'
quatern.d-method	Extract Image Attribute 'quatern_d'
quatern.d<-	Extract Image Attribute 'quatern_d'
quatern.d<--method	Extract Image Attribute 'quatern_d'
quaternion2mat44	Convert Quaternion into a Rotation Matrix
quaternion2rotation	Convert Quaternion into a Rotation Matrix
quatern_b	Extract Image Attribute 'quatern_b'
quatern_b-method	Extract Image Attribute 'quatern_b'
quatern_b-methods	Extract Image Attribute 'quatern_b'
quatern_b-methods,	Extract Image Attribute 'quatern_b'
quatern_b<-	Extract Image Attribute 'quatern_b'
quatern_b<--method	Extract Image Attribute 'quatern_b'
quatern_c	Extract Image Attribute 'quatern_c'
quatern_c-method	Extract Image Attribute 'quatern_c'
quatern_c-methods	Extract Image Attribute 'quatern_c'
quatern_c-methods,	Extract Image Attribute 'quatern_c'
quatern_c<-	Extract Image Attribute 'quatern_c'
quatern_c<--method	Extract Image Attribute 'quatern_c'
quatern_d	Extract Image Attribute 'quatern_d'
quatern_d-method	Extract Image Attribute 'quatern_d'
quatern_d-methods	Extract Image Attribute 'quatern_d'
quatern_d-methods,	Extract Image Attribute 'quatern_d'
quatern_d<-	Extract Image Attribute 'quatern_d'
quatern_d<--method	Extract Image Attribute 'quatern_d'

-- R --

readAFNI	readAFNI
readANALYZE	readANALYZE
readNIfTI	readNIfTI
regular	Extract Image Attribute 'regular'
regular-method	Extract Image Attribute 'regular'
regular-methods	Extract Image Attribute 'regular'
regular-methods,	Extract Image Attribute 'regular'
regular<-	Extract Image Attribute 'regular'
regular<--method	Extract Image Attribute 'regular'
reorient	Reorient Image using NIfTI header
resetSlopeIntercept	Change Intercept to 0 and Slope to 1 in NIfTI Object
rmgz	Remove File Extensions Around the NIfTI/ANALYZE Formats
rmhdr	Remove File Extensions Around the NIfTI/ANALYZE Formats
rmhdrgz	Remove File Extensions Around the NIfTI/ANALYZE Formats
rmimg	Remove File Extensions Around the NIfTI/ANALYZE Formats
rmimggz	Remove File Extensions Around the NIfTI/ANALYZE Formats
rmnii	Remove File Extensions Around the NIfTI/ANALYZE Formats
rmniigz	Remove File Extensions Around the NIfTI/ANALYZE Formats

-- S --

scannum	Extract Image Attribute 'scannum'
scannum-method	Extract Image Attribute 'scannum'
scannum-methods	Extract Image Attribute 'scannum'
scannum-methods,	Extract Image Attribute 'scannum'
scannum<-	Extract Image Attribute 'scannum'
scannum<--method	Extract Image Attribute 'scannum'
scl.inter	Extract Image Attribute 'scl_inter'
scl.inter-method	Extract Image Attribute 'scl_inter'
scl.inter<-	Extract Image Attribute 'scl_inter'
scl.inter<--method	Extract Image Attribute 'scl_inter'
scl.slope	Extract Image Attribute 'scl_slope'
scl.slope-method	Extract Image Attribute 'scl_slope'
scl.slope<-	Extract Image Attribute 'scl_slope'
scl.slope<--method	Extract Image Attribute 'scl_slope'
scl_inter	Extract Image Attribute 'scl_inter'
scl_inter-method	Extract Image Attribute 'scl_inter'
scl_inter-methods	Extract Image Attribute 'scl_inter'
scl_inter-methods,	Extract Image Attribute 'scl_inter'
scl_inter<-	Extract Image Attribute 'scl_inter'
scl_inter<--method	Extract Image Attribute 'scl_inter'
scl_slope	Extract Image Attribute 'scl_slope'
scl_slope-method	Extract Image Attribute 'scl_slope'
scl_slope-methods	Extract Image Attribute 'scl_slope'
scl_slope-methods,	Extract Image Attribute 'scl_slope'
scl_slope<-	Extract Image Attribute 'scl_slope'
scl_slope<--method	Extract Image Attribute 'scl_slope'
session.error	Extract Image Attribute 'session_error'
session.error-method	Extract Image Attribute 'session_error'
session.error<-	Extract Image Attribute 'session_error'
session.error<--method	Extract Image Attribute 'session_error'
session_error	Extract Image Attribute 'session_error'
session_error-method	Extract Image Attribute 'session_error'
session_error-methods	Extract Image Attribute 'session_error'
session_error-methods,	Extract Image Attribute 'session_error'
session_error<-	Extract Image Attribute 'session_error'
session_error<--method	Extract Image Attribute 'session_error'
sform	Extract NIfTI 3D Image Orientation
sform-method	Extract NIfTI 3D Image Orientation
sform-methods	Extract NIfTI 3D Image Orientation
sform.code	Extract Image Attribute 'sform_code'
sform.code-method	Extract Image Attribute 'sform_code'
sform.code<-	Extract Image Attribute 'sform_code'
sform.code<--method	Extract Image Attribute 'sform_code'
sform_code	Extract Image Attribute 'sform_code'
sform_code-method	Extract Image Attribute 'sform_code'
sform_code-methods	Extract Image Attribute 'sform_code'
sform_code-methods,	Extract Image Attribute 'sform_code'
sform_code<-	Extract Image Attribute 'sform_code'
sform_code<--method	Extract Image Attribute 'sform_code'
show-method	Class "afni"
show-method	Class "anlz"
show-method	Class "nifti"
sizeof.hdr	Extract Image Attribute 'sizeof_hdr'
sizeof.hdr-method	Extract Image Attribute 'sizeof_hdr'
sizeof_hdr	Extract Image Attribute 'sizeof_hdr'
sizeof_hdr-method	Extract Image Attribute 'sizeof_hdr'
sizeof_hdr-methods	Extract Image Attribute 'sizeof_hdr'
sizeof_hdr-methods,	Extract Image Attribute 'sizeof_hdr'
sizeof_hdr<-	Extract Image Attribute 'sizeof_hdr'
sizeof_hdr<--method	Extract Image Attribute 'sizeof_hdr'
slice	Methods for Function 'slice'
slice-method	Methods for Function 'slice'
slice-methods	Methods for Function 'slice'
slice.code	Extract Image Attribute 'slice_code'
slice.code-method	Extract Image Attribute 'slice_code'
slice.code<-	Extract Image Attribute 'slice_code'
slice.code<--method	Extract Image Attribute 'slice_code'
slice.duration	Extract Image Attribute 'slice_duration'
slice.duration-method	Extract Image Attribute 'slice_duration'
slice.duration<-	Extract Image Attribute 'slice_duration'
slice.duration<--method	Extract Image Attribute 'slice_duration'
slice.end	Extract Image Attribute 'slice_end'
slice.end-method	Extract Image Attribute 'slice_end'
slice.end<-	Extract Image Attribute 'slice_end'
slice.end<--method	Extract Image Attribute 'slice_end'
slice.nifti	Methods for Function 'slice'
slice.start	Extract Image Attribute 'slice_start'
slice.start-method	Extract Image Attribute 'slice_start'
slice.start<-	Extract Image Attribute 'slice_start'
slice.start<--method	Extract Image Attribute 'slice_start'
slice_code	Extract Image Attribute 'slice_code'
slice_code-method	Extract Image Attribute 'slice_code'
slice_code-methods	Extract Image Attribute 'slice_code'
slice_code-methods,	Extract Image Attribute 'slice_code'
slice_code<-	Extract Image Attribute 'slice_code'
slice_code<--method	Extract Image Attribute 'slice_code'
slice_duration	Extract Image Attribute 'slice_duration'
slice_duration-method	Extract Image Attribute 'slice_duration'
slice_duration-methods	Extract Image Attribute 'slice_duration'
slice_duration-methods,	Extract Image Attribute 'slice_duration'
slice_duration<-	Extract Image Attribute 'slice_duration'
slice_duration<--method	Extract Image Attribute 'slice_duration'
slice_end	Extract Image Attribute 'slice_end'
slice_end-method	Extract Image Attribute 'slice_end'
slice_end-methods	Extract Image Attribute 'slice_end'
slice_end-methods,	Extract Image Attribute 'slice_end'
slice_end<-	Extract Image Attribute 'slice_end'
slice_end<--method	Extract Image Attribute 'slice_end'
slice_overlay	Methods for Function slice_overlay
slice_overlay-method	Methods for Function slice_overlay
slice_overlay-methods	Methods for Function slice_overlay
slice_overlay.nifti	Methods for Function slice_overlay
slice_start	Extract Image Attribute 'slice_start'
slice_start-method	Extract Image Attribute 'slice_start'
slice_start-methods	Extract Image Attribute 'slice_start'
slice_start-methods,	Extract Image Attribute 'slice_start'
slice_start<-	Extract Image Attribute 'slice_start'
slice_start<--method	Extract Image Attribute 'slice_start'
smax	Extract Image Attribute 'smax'
smax-method	Extract Image Attribute 'smax'
smax-methods	Extract Image Attribute 'smax'
smax-methods,	Extract Image Attribute 'smax'
smax<-	Extract Image Attribute 'smax'
smax<--method	Extract Image Attribute 'smax'
smin	Extract Image Attribute 'smin'
smin-method	Extract Image Attribute 'smin'
smin-methods	Extract Image Attribute 'smin'
smin-methods,	Extract Image Attribute 'smin'
smin<-	Extract Image Attribute 'smin'
smin<--method	Extract Image Attribute 'smin'
space.time2xyzt	Bitwise Conversion Subroutines
srow.x	Extract Image Attribute 'srow_x'
srow.x-method	Extract Image Attribute 'srow_x'
srow.x<-	Extract Image Attribute 'srow_x'
srow.x<--method	Extract Image Attribute 'srow_x'
srow.y	Extract Image Attribute 'srow_y'
srow.y-method	Extract Image Attribute 'srow_y'
srow.y<-	Extract Image Attribute 'srow_y'
srow.y<--method	Extract Image Attribute 'srow_y'
srow.z	Extract Image Attribute 'srow_z'
srow.z-method	Extract Image Attribute 'srow_z'
srow.z<-	Extract Image Attribute 'srow_z'
srow.z<--method	Extract Image Attribute 'srow_z'
srow_x	Extract Image Attribute 'srow_x'
srow_x-method	Extract Image Attribute 'srow_x'
srow_x-methods	Extract Image Attribute 'srow_x'
srow_x-methods,	Extract Image Attribute 'srow_x'
srow_x<-	Extract Image Attribute 'srow_x'
srow_x<--method	Extract Image Attribute 'srow_x'
srow_y	Extract Image Attribute 'srow_y'
srow_y-method	Extract Image Attribute 'srow_y'
srow_y-methods	Extract Image Attribute 'srow_y'
srow_y-methods,	Extract Image Attribute 'srow_y'
srow_y<-	Extract Image Attribute 'srow_y'
srow_y<--method	Extract Image Attribute 'srow_y'
srow_z	Extract Image Attribute 'srow_z'
srow_z-method	Extract Image Attribute 'srow_z'
srow_z-methods	Extract Image Attribute 'srow_z'
srow_z-methods,	Extract Image Attribute 'srow_z'
srow_z<-	Extract Image Attribute 'srow_z'
srow_z<--method	Extract Image Attribute 'srow_z'
start_field	Extract Image Attribute 'start_field'
start_field-method	Extract Image Attribute 'start_field'
start_field-methods	Extract Image Attribute 'start_field'
start_field-methods,	Extract Image Attribute 'start_field'
start_field<-	Extract Image Attribute 'start_field'
start_field<--method	Extract Image Attribute 'start_field'

-- T --

tim.colors	Tim's Useful Color Table
toffset	Extract Image Attribute 'toffset'
toffset-method	Extract Image Attribute 'toffset'
toffset-methods	Extract Image Attribute 'toffset'
toffset-methods,	Extract Image Attribute 'toffset'
toffset<-	Extract Image Attribute 'toffset'
toffset<--method	Extract Image Attribute 'toffset'
translateCoordinate	Translate Voxel Coordinates

-- U --

unused1	Extract Image Attribute 'unused1'
unused1-method	Extract Image Attribute 'unused1'
unused1-methods	Extract Image Attribute 'unused1'
unused1-methods,	Extract Image Attribute 'unused1'
unused1<-	Extract Image Attribute 'unused1'
unused1<--method	Extract Image Attribute 'unused1'

-- V --

verified	Extract Image Attribute 'verified'
verified-method	Extract Image Attribute 'verified'
verified-methods	Extract Image Attribute 'verified'
verified-methods,	Extract Image Attribute 'verified'
verified<-	Extract Image Attribute 'verified'
verified<--method	Extract Image Attribute 'verified'
views	Extract Image Attribute 'views'
views-method	Extract Image Attribute 'views'
views-methods	Extract Image Attribute 'views'
views-methods,	Extract Image Attribute 'views'
views<-	Extract Image Attribute 'views'
views<--method	Extract Image Attribute 'views'
vols.added	Extract Image Attribute 'vols_added'
vols.added-method	Extract Image Attribute 'vols_added'
vols.added<-	Extract Image Attribute 'vols_added'
vols.added<--method	Extract Image Attribute 'vols_added'
vols_added	Extract Image Attribute 'vols_added'
vols_added-method	Extract Image Attribute 'vols_added'
vols_added-methods	Extract Image Attribute 'vols_added'
vols_added-methods,	Extract Image Attribute 'vols_added'
vols_added<-	Extract Image Attribute 'vols_added'
vols_added<--method	Extract Image Attribute 'vols_added'
vox.offset	Extract Image Attribute 'vox_offset'
vox.offset-method	Extract Image Attribute 'vox_offset'
vox.offset<-	Extract Image Attribute 'vox_offset'
vox.offset<--method	Extract Image Attribute 'vox_offset'
vox.units	Extract Image Attribute 'vox_units'
vox.units-method	Extract Image Attribute 'vox_units'
vox.units<-	Extract Image Attribute 'vox_units'
vox.units<--method	Extract Image Attribute 'vox_units'
voxdim	Gets Voxel Dimensions
voxres	Gets Voxel Resolution
vox_offset	Extract Image Attribute 'vox_offset'
vox_offset-method	Extract Image Attribute 'vox_offset'
vox_offset-methods	Extract Image Attribute 'vox_offset'
vox_offset-methods,	Extract Image Attribute 'vox_offset'
vox_offset<-	Extract Image Attribute 'vox_offset'
vox_offset<--method	Extract Image Attribute 'vox_offset'
vox_units	Extract Image Attribute 'vox_units'
vox_units-method	Extract Image Attribute 'vox_units'
vox_units-methods	Extract Image Attribute 'vox_units'
vox_units-methods,	Extract Image Attribute 'vox_units'
vox_units<-	Extract Image Attribute 'vox_units'
vox_units<--method	Extract Image Attribute 'vox_units'

-- W --

writeAFNI	writeAFNI
writeAFNI-method	writeAFNI
writeAFNI-methods	writeAFNI
writeANALYZE	writeANALYZE
writeANALYZE-method	writeANALYZE
writeANALYZE-methods	writeANALYZE
writeNIfTI	writeNIfTI
writeNIfTI-method	writeNIfTI
writeNIfTI-methods	writeNIfTI

-- X --

xyzt.units	Extract Image Attribute 'xyzt_units'
xyzt.units-method	Extract Image Attribute 'xyzt_units'
xyzt.units<-	Extract Image Attribute 'xyzt_units'
xyzt.units<--method	Extract Image Attribute 'xyzt_units'
xyzt2space	Bitwise Conversion Subroutines
xyzt2time	Bitwise Conversion Subroutines
xyzt_units	Extract Image Attribute 'xyzt_units'
xyzt_units-method	Extract Image Attribute 'xyzt_units'
xyzt_units-methods	Extract Image Attribute 'xyzt_units'
xyzt_units-methods,	Extract Image Attribute 'xyzt_units'
xyzt_units<-	Extract Image Attribute 'xyzt_units'
xyzt_units<--method	Extract Image Attribute 'xyzt_units'

-- Z --

zero_trans

Change Intercept to 0 and Slope to 1 in NIfTI Object

-- misc --

[<--method	Methods for Function [<- in Package 'base'
[<--methods	Methods for Function [<- in Package 'base'