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| oncomodel-package | Maximum likelihood tree models for oncogenesis |
| boot.conf.values | Bootstrap Confidence Values |
| comp.freq | Compare Model Probabilities to Frequencies |
| is.tree | Compare with Tree Format |
| kidney | Cytogenetic Data from Kidney Carcinoma |
| leafset.prob | Probability of a Set of Leaves |
| leafset.prob2 | Probability of a Set of Leaves |
| MLparameters | Compute Maximum Likelihood Parameters |
| MLtopology | Compute Maximum Likelihood Tree Topology |
| mrca | Most Recent Common Ancestor |
| oncomodel | Maximum likelihood tree models for oncogenesis |
| subtree | Subtree |