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| icesTAF-package | Functions to Support the ICES Transparent Assessment Framework |
| catage.long | Catch at Age in Long Format |
| catage.taf | Catch at Age in TAF Format |
| catage.xtab | Catch at Age in Crosstab Format |
| clean | Clean TAF Directories |
| clean.data | Clean Data |
| clean.library | Clean TAF Library |
| clean.software | Clean TAF Software |
| convert.spaces | Convert Spaces |
| cp | Copy Files |
| deps | List Dependencies |
| detach.packages | Detach Packages |
| div | Divide Columns |
| dos2unix | Convert Line Endings |
| download | Download File |
| download.github | Download GitHub Repository |
| draft.data | Draft DATA.bib |
| draft.data.script | Draft or create a bootstrap data script |
| draft.software | Draft SOFTWARE.bib |
| file.encoding | File Encoding |
| flr2taf | Convert FLR Table to TAF Format |
| get.remote.sha | Get Remote SHA |
| icesTAF | Functions to Support the ICES Transparent Assessment Framework |
| is.r.package | Is R Package |
| latin1.to.utf8 | Convert File Encoding |
| lim | Axis Limits |
| line.endings | Line Endings |
| long2taf | Convert Long Table to TAF Format |
| long2xtab | Convert Long Table to Crosstab Format |
| make | Run R Script If Needed |
| makeAll | Run All TAF Scripts as Needed |
| makeTAF | Run TAF Script If Needed |
| mkdir | Create Directory |
| msg | Show Message |
| os | Operating System |
| os.linux | Operating System |
| os.macos | Operating System |
| os.unix | Operating System |
| os.windows | Operating System |
| period | Period |
| plus | Rename Plus Group Column |
| read.bib | bibtex parser |
| read.taf | Read TAF Table from File |
| rmdir | Remove Empty Directory |
| rnd | Round Columns |
| sam2taf | Convert SAM Table to TAF Format |
| sourceAll | Run All TAF Scripts |
| sourceDir | Source Directory |
| sourceTAF | Run TAF Script |
| summary.taf | Summary Results in TAF Format |
| taf.blue | TAF Colors |
| taf.boot.path | Construct Path to a TAF bootstrap folder |
| taf.bootstrap | Bootstrap TAF Analysis |
| taf.colors | TAF Colors |
| taf.dark | TAF Colors |
| taf.data.path | Construct Path to a TAF bootstrap data file |
| taf.green | TAF Colors |
| taf.install | TAF Install |
| taf.libPaths | Add TAF Library Path |
| taf.library | TAF Library |
| taf.light | TAF Colors |
| taf.orange | TAF Colors |
| taf.png | PNG Device |
| taf.roxygenise | Process a TAF repo with the taf roclet |
| taf.session | TAF Session |
| taf.skeleton | TAF Skeleton |
| taf.sources | Extract sources from TAF *.bib file |
| taf.unzip | Unzip File |
| taf2long | Convert TAF Table to Long Format |
| taf2xtab | Convert TAF Table to Crosstab Format |
| tafpng | PNG Device |
| tt | TAF Transpose |
| unix2dos | Convert Line Endings |
| utf8.to.latin1 | Convert File Encoding |
| write.taf | Write TAF Table to File |
| xtab2long | Convert Crosstab Table to Long Format |
| xtab2taf | Convert Crosstab Table to TAF Format |
| zoom | Zoom |
| zoom.trellis | Zoom |
