Functions for Fetching 'GeOMe-db' Data

Documentation for package ‘geomedb’ version 2.0.1

fasterqDump	Download or convert fastq data from NCBI Sequence Read Archive using multiple threads
fastqDump	Download or convert fastq data from NCBI Sequence Read Archive in a single thread (Windows compatible)
listEntities	Get a list of entities (i.e. tables) available to query
listExpeditions	Get a list of expeditions for a GEOME project
listLoci	Get a list of loci that are stored in FASTA format directly in GEOME (not in the SRA)
listProjects	Get a list of projects in GEOME
prefetch	Download data from NCBI Sequence Read Archive in .sra format using FASP or HTTPS protocols
queryMetadata	Query metadata from the GEOME database.
querySanger	Query Sanger sequences directly from the GEOME database