Gene Analysis Toolkit in R

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Documentation for package ‘genekitr’ version 0.5.3

Help Pages

as.enrichdat Adjust dataframe for enrichment plot
biocOrg_name Datasets geneList entrez gene list with decreasing fold change value
Datasets Datasets geneList entrez gene list with decreasing fold change value
ensOrg_name Datasets geneList entrez gene list with decreasing fold change value
expoSheet Export list of datasets into different Excel sheets
geneList Datasets geneList entrez gene list with decreasing fold change value
genGO Gene GO enrichment analysis
genGSEA GSEA for a gene list with decreasing logFC value
genInfo Get gene related information
genKEGG Gene enrichment of KEGG analysis
genPubmed Gene related pubmed paper records
keggOrg_name Datasets geneList entrez gene list with decreasing fold change value
msig_category Datasets geneList entrez gene list with decreasing fold change value
msig_org Datasets geneList entrez gene list with decreasing fold change value
plotEnrich Dotplot for GO and KEGG enrichment analysis
plotGSEA GSEA plot
plotVenn Venn plot for groups of genes
plot_theme Themes for all plots
transId Transform gene id among symbol, entrezid, ensembl and uniprot