Facilitate Exploration of touRR optimisatioN

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Documentation for package ‘ferrn’ version 0.0.1

Help Pages

add_anchor A ggproto for drawing anchor points
add_anno A ggproto for annotating the symmetry of the starting points
add_dir_search A ggproto for drawing directional search points
add_end A ggproto for drawing start points
add_interp A ggproto for drawing interpolation path
add_interp_last A ggproto for drawing finish points
add_interrupt A ggproto for annotating the interrupted path
add_search A ggproto for drawing search points
add_space A ggproto for drawing circle
add_start A ggproto for drawing start points
add_theo A ggproto for drawing the theoretical basis, if applicable
bind_random Bind random bases in the projection bases space
bind_random_matrix Bind random bases in the projection bases space as a matrix
bind_theoretical Bind the theoretical best record
boa Simulated data
boa5 Simulated data
boa6 Simulated data
botanical_pal A customised colour palette based on Australian botanies
botanical_palettes A customised colour palette based on Australian botanies
clean_method Clean method names
compute_pca Plot the PCA projection of the projection bases space
explore_space_pca Plot the PCA projection of the projection bases space
explore_space_tour Plot the grand tour animation of the bases space in high dimension
explore_trace_interp Plot the trace the search progression
explore_trace_search Plot the count in each iteration
flip_sign Plot the PCA projection of the projection bases space
format_label Better label formatting to avoid overlapping
get_anchor Extract the anchor points on the geodesic path
get_basis_matrix Extract all the bases as a matrix
get_best Extract the record with the largest index value
get_dir_search Extract directional search points during the optimisation
get_interp Extract interpolated records
get_interp_last Extract the end point at each interpolation
get_interrupt Extract the end point of the interpolation and the target point in the iteration when an interruption happens
get_search Extract search points during the optimisation
get_search_count Extract the count in each iteration
get_space_param Estimate the radius of the background circle based on the randomly generated points
get_start Extract the starting records
get_theo Extract the theoretical best basis, if applicable
holes_1d_better Simulated data
holes_1d_geo Simulated data
holes_2d_better Simulated data
holes_2d_better_max_tries Simulated data
prep_space_tour Plot the grand tour animation of the bases space in high dimension
scale_color_continuous_botanical continuous scale colour function
scale_color_discrete_botanical continuous scale colour function
scale_fill_continuous_botanical continuous scale colour function
scale_fill_discrete_botanical continuous scale colour function
theme_fern A specific theme for trace plots