Analysis of Multiple ChIP-Seq Data

Documentation for package ‘enRich’ version 3.1

enRich-package	Analysis of multiple ChIP-seq data.
enRich	Analysis of multiple ChIP-seq data.
enrich.mix	Detection of enriched and differentially bound regions for fitting results of 'mix' and 'mix.joint'.
enrich.mrf	Detection of enriched and differentially bound regions for fitting results of 'mrf' and 'mrf.joint'.
FDR	Identification of enriched regions by controlling a given FDR level
IPE	Estimating the ImmunoPrecipitation (IP) efficiency of a ChIP-seq experiment.
mix	Fitting mixture of two densities, either Poisson or Negative Binomial, to ChIP-seq data.
mix.joint	Joint fitting of mixture of Poisson or NB densities to ChIP-seq experiments.
mrf	Fitting a one-dimensional Markov random field mixture model to ChIP-seq data.
mrf.joint	Joint fitting of a one-dimensional Markov random field model to multiple ChIP-seq datasets.
p300cbp.1000bp	Example Data
p300cbp.200bp	Example Data