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| embryogrowth-package | The package embryogrowth |
| calibrate.datalogger | Calibrate data loggers and correct time series of temperatures |
| ChangeSSM | Generate set of parameters for different forms of thermal norm of reaction |
| DatabaseNestingArea | Database of RMU for marine turtles |
| DatabaseTSD | Database of TSD information for reptiles |
| DatabaseTSD.version | Version of database of TSD information for reptiles |
| dydt.exponential | Return the derivative of the exponential function |
| dydt.Gompertz | Return the derivative of the Gompertz function |
| dydt.linear | Return the derivative of the linear function |
| FormatNests | Create a dataset of class Nests to be used with searchR |
| GenerateAnchor | Generate a set of anchored parameters |
| GenerateConstInc | Generate a data.frame with constant incubation temperature and incubation duration |
| Generate_hatchling_metric | Generate a data.frame that can be used as test value for searchR() |
| GRTRN_MHmcmc | Metropolis-Hastings algorithm for Embryo Growth Rate Thermal Reaction Norm |
| HatchingSuccess.fit | Fit a hatching success model to data using maximum likelihood |
| HatchingSuccess.lnL | Return -log likelihood of the data and the parameters |
| HatchingSuccess.MHmcmc | Metropolis-Hastings algorithm for hatching success |
| HatchingSuccess.MHmcmc_p | Generates set of parameters to be used with HatchingSuccess.MHmcmc() |
| HatchingSuccess.model | Return the hatching success according the set of parameters and temperatures |
| hist.Nests | Show the histogram of temperatures with set of nests |
| hist.NestsResult | Show the histogram of temperatures with set of nests |
| info.nests | Calculte statistics about nests |
| integral.exponential | Return the derivative of the exponential function |
| integral.Gompertz | Return the result of the Gompertz function |
| integral.linear | Return the linear function |
| likelihoodR | Estimate the likelihood of a set of parameters for nest incubation data |
| logLik.HatchingSuccess | Return -log L of a fit |
| logLik.NestsResult | Return Log Likelihood of a fit generated by searchR |
| logLik.STRN | Return Log Likelihood of a fit generated by STRN |
| logLik.tsd | Return Log Likelihood of a fit generated by tsd |
| movement | Analyze movement recorded within a nest with an accelerometer datalogger |
| MovingIncubation | Simulate incubation of a nest with the beginning of incubation varying |
| nest | Timeseries of temperatures for nests |
| nobs.HatchingSuccess | Return number of observations of a fit |
| nobs.NestsResult | Return number of observations of a fit |
| plot.HatchingSuccess | Plot results of HatchingSuccess.fit() that best describe hatching success |
| plot.NestsResult | Plot the embryo growth |
| plot.tsd | Plot results of tsd() that best describe temperature-dependent sex determination |
| plotR | Show the fitted growth rate dependent on temperature and its density |
| plot_transition | Show fonction used for transition |
| predict.HatchingSuccess | Return prediction based on a model fitted with HatchingSuccess.fit() |
| predict.tsd | Estimate sex ratio according to constant incubation temperature |
| P_TRT | Estimate the transitional range of temperatures based on a set of parameters |
| resultNest_3p_Dallwitz | Fit using the nest database |
| resultNest_3p_Weibull | Result of the fit using the nest database using Weibull function |
| resultNest_4p_normal | Result of the fit using the nest database using asymmetric normal function |
| resultNest_4p_SSM | Fit using the nest database |
| resultNest_4p_SSM_Linear | Fit using the nest database |
| resultNest_4p_transition | Result of the fit using the nest database using transition |
| resultNest_4p_trigo | Result of the fit using the nest database using trigonometric function |
| resultNest_4p_weight | Fit using the nest database with weight |
| resultNest_5p_Dallwitz | Fit using the nest database |
| resultNest_6p_SSM | Fit using the nest database |
| resultNest_mcmc_4p_SSM | Result of the mcmc using the nest database |
| resultNest_mcmc_4p_SSM_Linear | Result of the mcmc using the nest database |
| resultNest_mcmc_6p_SSM | Result of the mcmc using the nest database |
| resultNest_mcmc_newp | Result of the mcmc using the nest database with anchored parameters |
| resultNest_newp | Fit using the nest database with anchored parameters |
| searchR | Fit the parameters that best represent nest incubation data. |
| stages | Database of of embryonic development and thermosensitive period of development for sex determination |
| STRN | Estimate the parameters that best describe the sexualisation thermal reaction norm within the TSP |
| STRN_MHmcmc | Metropolis-Hastings algorithm for Sexualisation Thermal Reaction Norm |
| summary.Nests | Summarize the information from a Nests object. |
| switch.transition | Add a transition parameter on a set of parameters or remove it |
| tempConst | Timeseries of constant temperatures for nests |
| test.parallel | Estimate the likelihood of a set of parameters for nest incubation data with or without parallel computing option |
| TRN_MHmcmc_p | Generates set of parameters to be used with GRTRN_MHmcmc() or STRN_MHmcmc() |
| tsd | Estimate the parameters that best describe temperature-dependent sex determination |
| tsd_MHmcmc | Metropolis-Hastings algorithm for Sex ratio |
| tsd_MHmcmc_p | Generates set of parameters to be used with tsd_MHmcmc() |
| TSP.list | Database of thermosensitive period of development for sex determination |
| uncertainty.datalogger | Uncertainty of average temperatures obtained using temperature data logger |
| web.tsd | Run a shiny application for basic functions of tsd function |
| weightmaxentropy | Search for the weights of the nests which maximize the entropy of nest temperatures distribution |