| arp2gen | Fast and simple conversion of arlequin (.arp) genotype files to genepop files, form within the 'R' environment. |
| basicStats | Claculate basic descriptive population parameters from a genepop genotype file |
| bigDivPart | Genetic differentiation statistics and their estimators for high throughput data (e.g. RAD-seq derived SNPS) |
| Big_data | Example infile for diveRsity package |
| chiCalc | Testing sample independence from genotype counts |
| corPlot | A function to plot the relationship between Gst, G'st, Theta, D (Jost) and the mean number of alleles at a locus. A reimplementation of 'corPlot'. This function will replace the old function in later version of the package. |
| diffCalc | A faster function for calculating genetic differentiation statistics |
| diffPlot | A function to plot pairwise statistics calculated by divPart. |
| divBasic | A function to calculate basic population parameters such as allelic richness, observed heterozygosity, as well as expected heterozygosity. |
| divMigrate | An experimental function for the detection of directional differentiation from microsatellite data. |
| divOnline | A function to launch a web app version of 'diveRsity' from the local system. |
| divPart | Genetic differentiation statistics and their estimators |
| divRatio | Calculates the standardised diversity ratios relative to a 'yardstick' reference population following Skrbinsek et al., 2012. |
| divSimCo | Similarity coefficients for co-dominant diploid genenotype data |
| fastDivPart | Genetic differentiation statistics and their estimators |
| fstOnly | A minimal function for the calculate of Weir & Cockerham's (1984) F_ST and F_IT from codominant molecular data in the genepop format. |
| gpSampler | Randomly sample a genepop file |
| haploDiv | A function, allowing the calculation of Weir & Cockerham's (1984) F_{ST} from haploid genotypes in the genepop |
| inCalc | A function to calculate locus informative for the inference of ancestry |
| microPlexer | Launches a 'shiny' app for the arrangement of microsatellite loci into size and fluorophore based multiplex groups. |
| polyIn | A function for calculating informativeness for the inference of ancestry from loci of any ploidy. |
| pop_stats | Example pop_stats data frame for use in the function 'divRatio' |
| readGenepop | A function to calculate allele frequencies from genepop files. |
| snp2gen | Conversion function for SNP nucleotide genotype matrix to a genepop file. |
| SNPs | Example input format for 'snp2gp' function |
| Test_data | Example infile for diveRsity package |