| cleanMCMCtrees | Run MCMC for Coalescent Trees |
| coalescentMCMC | Run MCMC for Coalescent Trees |
| dcoal | Density Functions of Various Time-Dependent Coalescent Models |
| dcoal.linear | Density Functions of Various Time-Dependent Coalescent Models |
| dcoal.step | Density Functions of Various Time-Dependent Coalescent Models |
| dcoal.time | Density Functions of Various Time-Dependent Coalescent Models |
| dcoal.time2 | Density Functions of Various Time-Dependent Coalescent Models |
| EdgeLengthJittering | Trees Operators for Running MCMC |
| getLastTree | Run MCMC for Coalescent Trees |
| getMCMCstats | Run MCMC for Coalescent Trees |
| getMCMCtrees | Run MCMC for Coalescent Trees |
| NeighborhoodRearrangement | Trees Operators for Running MCMC |
| saveMCMCtrees | Run MCMC for Coalescent Trees |
| sim.coalescent | Coalescent Simulation and Visualisation |
| TipInterchange | Trees Operators for Running MCMC |
| treeOperators | Trees Operators for Running MCMC |