| ZIBBSeqDiscovery-package | Zero-Inflated Beta-Binomial Modeling of Microbiome Count Data |
| constrained.estimate | Estimate parameters with constrained approach |
| constrained.loglikelihood | Define the objective function in optimization procedure for estimating parameters with constrained approach |
| data.Y | Data set for ZIBBSeqDiscovery |
| fitZIBB | The main function to fit ZIBB model |
| free.estimate | Estimate parameters with free approach |
| free.loglikelihood | Define the objective function in optimization procedure for estimating parameters with free approach |
| kostic.x | Data set for ZIBBSeqDiscovery |
| kostic.y | Data set for ZIBBSeqDiscovery |
| mcc.adj | Using MCC method to replace NAs in the p values |
| regression | Simple linear regression |
| ZIBBSeqDiscovery | Zero-Inflated Beta-Binomial Modeling of Microbiome Count Data |