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| R0-package | Estimation of R0 and Real-Time Reproduction Number from Epidemics |
| check.incid | Check incid in the input |
| est.GT | Find the best-fitting GT distribution for a series of serial interval |
| est.R0.AR | Estimate R0 from attack rate of an epidemic |
| est.R0.EG | Estimate R from exponential growth rate |
| est.R0.ML | Estimate the reproduction number by maximum likelihood |
| est.R0.SB | Estimate the time dependent reproduction number using a Bayesian approach |
| est.R0.TD | Estimate the time dependent reproduction number |
| estimate.R | Estimate R0 for one incidence dataset using several methods |
| generation.time | Generation Time distribution |
| Germany.1918 | Germany.1918 exemple dataset |
| GT.chld.hsld | 2009 A/H1N1 observed Generation Time distribution |
| H1N1.serial.interval | H1N1 serial interval sample |
| impute.incid | Optimiziation routine for incidence imputation |
| plot.R0.S | Plot objects from sensitivity.analysis |
| plotfit | Generic S3 method to plot either "R0.R" and "R0.sR" objects |
| R0 | Estimation of R0 and Real-Time Reproduction Number from Epidemics |
| sa.GT | Sensitivity analysis of reproduction ratio with varying GT distribution |
| sa.time | Sensitivity analysis of basic reproduction ratio to begin/end dates |
| sensitivity.analysis | Sensitivity analysis of basic reproduction ratio to begin/end dates |
| sim.epid | Epidemic outbreak simulation |
| sim.epid.indiv | Influenza-like illness simulation (individual-based model) |
| smooth.Rt | Smooth real-time reproduction number over larger time period |