| PedCNV-package | CNV association implementation |
| AssoTestProc | CNV association test procedure |
| ClusProc | CNV clustering Procedure |
| envirX | CNV simulated environmental variables |
| fam | CNV simulated data |
| phi | Empirical correlation matrix |
| plot.clust | Plots clustering result |
| print.asso | Prints association study results |
| print.clust | Prints clustering results |
| signal | CNV simulated intensity measurements |
| STE | Score test with the most probable CNV |
| STIM | Score test with the intensity value |