| HMM | Bayesian Homogeneous Markov Model (NHMM) |
| NHMM | Bayesian Non-homogeneous Markov Model (NHMM) |
| NHMMdata | Simulated Datasets |
| NHMM_MVN | Bayesian Non-homogeneous Markov Model with Multivariate Normal emission distribution (NHMMMVN) |
| OBIC | Calculates BIC, AIC, PLS, log-likelihood |
| Oemparams | Emission Parameters |
| OQQ | Calculates the mean of the transition matrix |
| OWcoef | Coefficients for W (emission inputs) |
| OXcoef | Coefficients for X (transition inputs) |
| Oz | Most probable state (similar to Viterbi) |