| calc_sim_score | Calculating the similarity scores |
| cluster_info | Extract the cluster information of _NFP_. |
| cluster_info-method | Extract the cluster information of _NFP_. |
| cluster_info-methods | Extract the cluster information of _NFP_. |
| group | Group information of _NFPRefnet_ |
| group-method | Group information of _NFPRefnet_ |
| group-methods | Group information of _NFPRefnet_ |
| install_data_package | Install NFP data package NFPdata |
| kegg_refnet | Human KEGG signal pathway maps |
| load_KEGG_refnet | Load the the reference molecular networks |
| net | Basic networks of _NFPRefnet_ class |
| net-method | Basic networks of _NFPRefnet_ class |
| net-methods | Basic networks of _NFPRefnet_ class |
| NFP | The NFP package |
| NFP-class | 'NFP-class' |
| NFPRefnet-class | 'NFPRefnet-class' |
| perm_score | Extract the randomized similarity score |
| perm_score-method | Extract the randomized similarity score |
| perm_score-methods | Extract the randomized similarity score |
| plot_NFP | Plot NFP results |
| plot_NFP-method | Plot NFP results |
| plot_NFP-methods | Plot NFP results |
| plot_NFPlist | Plot multiple NFPs. |
| refnet_name | Names of basic networks |
| refnet_name-method | Names of basic networks |
| refnet_name-methods | Names of basic networks |
| show | The show generic function |
| show-method | The show generic function |
| show-method | Show an Object |
| show-methods | The show generic function |
| show_NFPRefnet | Show an Object |
| show_NFPRefnet-methods | Show an Object |
| subnet | Subset the basic networks |
| subnet-method | Subset the basic networks |
| subnet-methods | Subset the basic networks |
| sub_NFP | subset of NFP object |
| sub_NFP-method | subset of NFP object |
| sub_NFP-methods | subset of NFP object |