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| LICORS-package | Light Cone Reconstruction of States - Predictive State Estimation From Spatio-Temporal Data |
| complete_LICORS_control | Utilities for "LICORS" class |
| compute_LC_coordinates | Computes coordinates of PLC and FLC relative to origin |
| compute_LICORS_loglik | Log-likelihood of LICORS model |
| compute_margin_coordinates | Get LC configuration from a (N+1)D field |
| compute_mixture_penalty | Penalty of mixture weights |
| compute_NEC | Compute Negative Entropy Criterion (NEC) |
| contCA00 | Simulated 7 state (1+1)D field |
| data2LCs | Iterate over (N+1)D field and get all LC configurations |
| embed2 | Improved embed() function |
| estimate_LC.pdf.state | Estimate PLC/FLC distributions for all states |
| estimate_LC_pdfs | Estimate PLC/FLC distributions for all states |
| estimate_LC_pdf_state | Estimate PLC/FLC distributions for all states |
| estimate_state_adj_matrix | Estimate adjacency matrix for equivalent FLC distributions based on states |
| estimate_state_probs | Estimate conditional/marginal state probabilities |
| get_LC_config | Get configuration of a light cone (LC) |
| get_spacetime_grid | Get an iterator over the space-time coordinates of the field. |
| image2 | Improved image() function |
| initialize_states | State initialization for iterative algorithms (randomly or variants of kmeans) |
| kmeanspp | Kmeans++ |
| LC-utils | Utilities for LC class |
| LC_coordinates2control_settings | Utilities for LC class |
| LICORS | Light Cone Reconstruction of States - Predictive State Estimation From Spatio-Temporal Data |
| make_legend | Improved image() function |
| merge_states | Merge several states into one |
| mixed_LICORS | Mixed LICORS: An EM-like Algorithm for Predictive State Space Estimation |
| mixed_LICORS-utils | Utilities for "LICORS" class |
| mv_wKDE | Weighted kernel density estimator (wKDE) |
| normalize | Normalize a matrix/vector to sum to one (probability simplex) |
| plot.LC | Utilities for LC class |
| plot.mixed_LICORS | Utilities for "LICORS" class |
| predict.mixed_LICORS | Utilities for "LICORS" class |
| predict_FLC_given_PLC | Predict FLCs given new PLCs |
| rdensity | Generate random sample from density() or wKDE |
| relabel_vector | Relabels a vector to consecutive labels |
| remove_small_sample_states | Reassign low sample states to close states |
| search_knn | K nearest neighbor (KNN) search |
| setup_LC_geometry | Setup light cone geometry |
| sparsify_weights | Sparsify weights |
| states2weight_matrix | Converts label vector to 0/1 mixture weight matrix |
| summary.LC | Utilities for LC class |
| summary.mixed_LICORS | Utilities for "LICORS" class |
| threshold | Threshold a matrix/vector below and above |
| weight_matrix2states | Returns unique state assignment from a (row-wise) weight matrix |
| wKDE | Weighted kernel density estimator (wKDE) |