| adonis3 | Permutational Multivariate Analysis of Variance Using Distance Matrices (Freedman-Lane permutation) |
| dmanova | Distance-based Multivariate Analysis of Variance (Analytical P-value Calculation) |
| GMPR | Geometric Mean of Pairwise Ratios (GMPR) Normalization for Zero-inflated Count Data |
| GUniFrac | Generalized UniFrac distances for comparing microbial communities. |
| PermanovaG | Permutational Multivariate Analysis of Variance Using Multiple Distance Matrices |
| PermanovaG2 | Permutational Multivariate Analysis of Variance Using Multiple Distance Matrices(Freedman-Lane Permutation) |
| Rarefy | Rarefy a Count Table to Equal Sequencing Depth |
| SimulateMSeq | A Semiparametric Model-based Microbiome Sequencing Data Simulator |
| stool.otu.tab | Stool Microbiome OTU Count Table |
| throat.meta | Throat Microbiome Meta Data |
| throat.otu.tab | Throat Microbiome OTU Count Table |
| throat.tree | UPGMA Tree of Throat Microbiome OTUs |
| vaginal.otu.tab | Vaginal Microbiome OTU Count Table |
| ZicoSeq | A linear Model-based Permutation Test for Differential Abundance Analysis of Microbiome Data and Other Omics Data |
| ZicoSeq.plot | A Plot Function for Visualizing the ZicoSeq Results |