| add.cond.mean.many |
Mean counts and particle time averages for birth-death processes with immigration |
| add.cond.mean.one |
Mean counts and particle time averages for birth-death processes with immigration |
| add.cond.meanSq.one |
Mean counts and particle time averages for birth-death processes with immigration |
| add.generator |
Generating functions for birth-death processes with immigration |
| add.joint.mean.many |
Mean counts and particle time averages for birth-death processes with immigration |
| add.joint.mean.one |
Mean counts and particle time averages for birth-death processes with immigration |
| add.joint.meanSq.one |
Mean counts and particle time averages for birth-death processes with immigration |
| add.uncond.mean.one |
ENplus, ENminus, Eholdtime, unconditional on ending state. |
| addhold.cond.mean.one |
Mean counts and particle time averages for birth-death processes with immigration |
| addhold.generator |
Generating functions for birth-death processes with immigration |
| addhold.joint.mean.one |
Mean counts and particle time averages for birth-death processes with immigration |
| addrem.cond.mean.one |
Mean counts and particle time averages for birth-death processes with immigration |
| addrem.generator |
Generating functions for birth-death processes with immigration |
| addrem.joint.mean.one |
Mean counts and particle time averages for birth-death processes with immigration |
| addremhold.generator |
Generating functions for birth-death processes with immigration |
| all.cond.mean.PO |
Mean counts and particle time averages for birth-death processes with immigration |
| all.cond.mean2.PO |
Mean counts and particle time averages for birth-death processes with immigration |
| ARsim |
Accept-Reject Simulation |
| genDoneSided |
Numerical Differentiation |
| getBDinform.full.SC.manual |
Helpers for Getting Information Matrix for MLE estimates on Partially Observed Linear Birth Death (_S_pecial _C_ase with constrained immigration) |
| getBDinform.lost.SC.manual |
Helpers for Getting Information Matrix for MLE estimates on Partially Observed Linear Birth Death (_S_pecial _C_ase with constrained immigration) |
| getBDinform.PO |
Get Information Matrix for MLE estimates on Partially Observed Linear Birth Death (_S_pecial _C_ase with constrained immigration) |
| getBDinform.PO.SC |
Get Information Matrix for MLE estimates on Partially Observed Linear Birth Death (_S_pecial _C_ase with constrained immigration) |
| getBDinform.PO.SC.manual |
Helpers for Getting Information Matrix for MLE estimates on Partially Observed Linear Birth Death (_S_pecial _C_ase with constrained immigration) |
| getBDjTimes |
Get Jump times of a BD process. |
| getBDMCsPOlist |
Methods for Function 'getBDMCsPOlist' in Package 'DOBAD' |
| getBDMCsPOlist-method |
Methods for Function 'getBDMCsPOlist' in Package 'DOBAD' |
| getBDMCsPOlist-methods |
Methods for Function 'getBDMCsPOlist' in Package 'DOBAD' |
| getBDsummaryExpecs |
Functions That Calculate Product Expectations Needed for Inference via EM Algorithm |
| getBDsummaryProdExpecs |
Functions That Calculate Product Expectations Needed for Inference via EM Algorithm |
| getDataSummary |
Calculate Some Summarizing Information for the Given Data |
| getDataSummary.CTMC_PO_many |
Calculate Some Summarizing Information for the Given Data |
| getInitParams |
Get multiple starting parameters for EM |
| getIthJumpTime |
Get the jump times from a CTMC. |
| getIthJumpTimes |
Get the jump times from a CTMC. |
| getIthState |
Get the jump times from a CTMC. |
| getMCstate |
Get the state of a CTMC at various times |
| getNewParams.SC |
Solve for new parameters in restricted model in EM algorithm. |
| getPartialData |
Get "partially Observed " Chain from a fully observed one. |
| getStates |
Get list of jump states. |
| getStates-method |
Get list of jump states. |
| getSubMC |
Extract a Sub Markov Chain |
| getT |
~~ Methods for Function getT in Package 'DOBAD' ~~ |
| getT-method |
~~ Methods for Function getT in Package 'DOBAD' ~~ |
| getT-methods |
~~ Methods for Function getT in Package 'DOBAD' ~~ |
| getTimes |
Get list of jump times. |
| getTimes-method |
Get list of jump times. |
| getTs |
~~ Methods for Function getTs in Package 'DOBAD' ~~ |
| getTs-method |
~~ Methods for Function getTs in Package 'DOBAD' ~~ |
| getTs-methods |
~~ Methods for Function getTs in Package 'DOBAD' ~~ |
| graph.CTMC |
Plot CTMCs (possibly Partially Observed) |
| graph.CTMC.PO |
Plot CTMCs (possibly Partially Observed) |
| rem.cond.mean.many |
Mean counts and particle time averages for birth-death processes with immigration |
| rem.cond.mean.one |
Mean counts and particle time averages for birth-death processes with immigration |
| rem.cond.meanSq.one |
Mean counts and particle time averages for birth-death processes with immigration |
| rem.generator |
Generating functions for birth-death processes with immigration |
| rem.joint.mean.many |
Mean counts and particle time averages for birth-death processes with immigration |
| rem.joint.mean.one |
Mean counts and particle time averages for birth-death processes with immigration |
| rem.joint.meanSq.one |
Mean counts and particle time averages for birth-death processes with immigration |
| rem.uncond.mean.one |
ENplus, ENminus, Eholdtime, unconditional on ending state. |
| remhold.cond.mean.one |
Mean counts and particle time averages for birth-death processes with immigration |
| remhold.generator |
Generating functions for birth-death processes with immigration |
| remhold.joint.mean.one |
Mean counts and particle time averages for birth-death processes with immigration |
| sampleJumpTime2 |
Functions for Simulating Conditionally the first Jump of a chain. |
| sim.condBD |
Simulate birth-death process, Conditionally upon observing its state at finite, discrete time points |
| sim.condBD.1 |
Simulate birth-death process, Conditionally upon observing its state at finite, discrete time points |
| sim.condBD.main |
Simulate birth-death process, Conditionally upon observing its state at finite, discrete time points |
| sim.condBD.main.CTMC_PO_1 |
Simulate birth-death process, Conditionally upon observing its state at finite, discrete time points |
| sim.condBD.main.default |
Simulate birth-death process, Conditionally upon observing its state at finite, discrete time points |
| sim.condBD.main.list |
Simulate birth-death process, Conditionally upon observing its state at finite, discrete time points |
| simplify |
Transform Lists to Vectors |